(17 nodes) Mixed, incl. Ufd1-like, Nn domain, and CDC48, N-terminal subdomain network (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0BQP9_PARTE	Uncharacterized protein. (334 aa)
	A0BXK4_PARTE	MPN domain-containing protein. (580 aa)
	A0C7Q6_PARTE	AAA domain-containing protein. (445 aa)
	A0C810_PARTE	MPN domain-containing protein. (580 aa)
	A0C8R3_PARTE	Uncharacterized protein. (746 aa)
	A0CHG3_PARTE	Uncharacterized protein. (283 aa)
	A0CJJ6_PARTE	UBX domain-containing protein. (464 aa)
	A0CKJ9_PARTE	WD_REPEATS_REGION domain-containing protein. (548 aa)
	A0CMD2_PARTE	Uncharacterized protein. (693 aa)
	A0CQS3_PARTE	Uncharacterized protein. (285 aa)
	A0D384_PARTE	Uncharacterized protein. (248 aa)
	A0DT94_PARTE	Uncharacterized protein. (283 aa)
	A0DVN2_PARTE	Uncharacterized protein; Belongs to the AAA ATPase family. (817 aa)
	A0E0B8_PARTE	Uncharacterized protein; Belongs to the AAA ATPase family. (818 aa)
	A0E1X0_PARTE	Uncharacterized protein. (748 aa)
	A0E6F9_PARTE	Uncharacterized protein. (472 aa)
	A0EEE7_PARTE	Uncharacterized protein. (772 aa)

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BQP9_PARTE	A0BXK4_PARTE	A0BQP9	A0BXK4	Uncharacterized protein.	MPN domain-containing protein.	0.958
A0BQP9_PARTE	A0C7Q6_PARTE	A0BQP9	A0C7Q6	Uncharacterized protein.	AAA domain-containing protein.	0.950
A0BQP9_PARTE	A0C810_PARTE	A0BQP9	A0C810	Uncharacterized protein.	MPN domain-containing protein.	0.958
A0BQP9_PARTE	A0C8R3_PARTE	A0BQP9	A0C8R3	Uncharacterized protein.	Uncharacterized protein.	0.730
A0BQP9_PARTE	A0CHG3_PARTE	A0BQP9	A0CHG3	Uncharacterized protein.	Uncharacterized protein.	0.646
A0BQP9_PARTE	A0CJJ6_PARTE	A0BQP9	A0CJJ6	Uncharacterized protein.	UBX domain-containing protein.	0.932
A0BQP9_PARTE	A0CKJ9_PARTE	A0BQP9	A0CKJ9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.730
A0BQP9_PARTE	A0CMD2_PARTE	A0BQP9	A0CMD2	Uncharacterized protein.	Uncharacterized protein.	0.955
A0BQP9_PARTE	A0CQS3_PARTE	A0BQP9	A0CQS3	Uncharacterized protein.	Uncharacterized protein.	0.646
A0BQP9_PARTE	A0D384_PARTE	A0BQP9	A0D384	Uncharacterized protein.	Uncharacterized protein.	0.955
A0BQP9_PARTE	A0DT94_PARTE	A0BQP9	A0DT94	Uncharacterized protein.	Uncharacterized protein.	0.646
A0BQP9_PARTE	A0DVN2_PARTE	A0BQP9	A0DVN2	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.950
A0BQP9_PARTE	A0E0B8_PARTE	A0BQP9	A0E0B8	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.950
A0BQP9_PARTE	A0E1X0_PARTE	A0BQP9	A0E1X0	Uncharacterized protein.	Uncharacterized protein.	0.730
A0BQP9_PARTE	A0E6F9_PARTE	A0BQP9	A0E6F9	Uncharacterized protein.	Uncharacterized protein.	0.932
A0BQP9_PARTE	A0EEE7_PARTE	A0BQP9	A0EEE7	Uncharacterized protein.	Uncharacterized protein.	0.950
A0BXK4_PARTE	A0BQP9_PARTE	A0BXK4	A0BQP9	MPN domain-containing protein.	Uncharacterized protein.	0.958
A0BXK4_PARTE	A0C7Q6_PARTE	A0BXK4	A0C7Q6	MPN domain-containing protein.	AAA domain-containing protein.	0.977
A0BXK4_PARTE	A0C810_PARTE	A0BXK4	A0C810	MPN domain-containing protein.	MPN domain-containing protein.	0.900
A0BXK4_PARTE	A0C8R3_PARTE	A0BXK4	A0C8R3	MPN domain-containing protein.	Uncharacterized protein.	0.947