(6 nodes) DNA ligase IV complex network (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0C1A3_PARTE	DNA_LIGASE_A3 domain-containing protein. (416 aa)
	A0CCG0_PARTE	DNA_LIGASE_A3 domain-containing protein. (416 aa)
	A0DK55_PARTE	DNA ligase. (944 aa)
	A0E0N6_PARTE	DNA ligase. (739 aa)
	A0EC59_PARTE	Uncharacterized protein. (399 aa)
	PTMB.443c	DNA ligase, putative. (277 aa)

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0C1A3_PARTE	A0CCG0_PARTE	A0C1A3	A0CCG0	DNA_LIGASE_A3 domain-containing protein.	DNA_LIGASE_A3 domain-containing protein.	0.900
A0C1A3_PARTE	A0EC59_PARTE	A0C1A3	A0EC59	DNA_LIGASE_A3 domain-containing protein.	Uncharacterized protein.	0.904
A0CCG0_PARTE	A0C1A3_PARTE	A0CCG0	A0C1A3	DNA_LIGASE_A3 domain-containing protein.	DNA_LIGASE_A3 domain-containing protein.	0.900
A0CCG0_PARTE	A0EC59_PARTE	A0CCG0	A0EC59	DNA_LIGASE_A3 domain-containing protein.	Uncharacterized protein.	0.905
A0DK55_PARTE	A0E0N6_PARTE	A0DK55	A0E0N6	DNA ligase.	DNA ligase.	0.900
A0E0N6_PARTE	A0DK55_PARTE	A0E0N6	A0DK55	DNA ligase.	DNA ligase.	0.900
A0EC59_PARTE	A0C1A3_PARTE	A0EC59	A0C1A3	Uncharacterized protein.	DNA_LIGASE_A3 domain-containing protein.	0.904
A0EC59_PARTE	A0CCG0_PARTE	A0EC59	A0CCG0	Uncharacterized protein.	DNA_LIGASE_A3 domain-containing protein.	0.905