(9 nodes) Protein K63-linked ubiquitination network (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0E2N3_PARTE	Uncharacterized protein. (486 aa)
	A0BDC7_PARTE	WD_REPEATS_REGION domain-containing protein. (244 aa)
	A0BDP7_PARTE	UBIQUITIN_CONJUGAT_2 domain-containing protein. (140 aa)
	A0BKI9_PARTE	Uncharacterized protein. (486 aa)
	A0BWH6_PARTE	UBIQUITIN_CONJUGAT_2 domain-containing protein. (140 aa)
	A0CII1_PARTE	Uncharacterized protein. (489 aa)
	A0DAA5_PARTE	Uncharacterized protein. (449 aa)
	A0DXT2_PARTE	Uncharacterized protein. (486 aa)
	A0EAS1_PARTE	WD_REPEATS_REGION domain-containing protein. (579 aa)

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BKI9_PARTE	A0CII1_PARTE	A0BKI9	A0CII1	Uncharacterized protein.	Uncharacterized protein.	0.545
A0BKI9_PARTE	A0DXT2_PARTE	A0BKI9	A0DXT2	Uncharacterized protein.	Uncharacterized protein.	0.545
A0BKI9_PARTE	A0E2N3_PARTE	A0BKI9	A0E2N3	Uncharacterized protein.	Uncharacterized protein.	0.543
A0CII1_PARTE	A0BKI9_PARTE	A0CII1	A0BKI9	Uncharacterized protein.	Uncharacterized protein.	0.545
A0CII1_PARTE	A0DXT2_PARTE	A0CII1	A0DXT2	Uncharacterized protein.	Uncharacterized protein.	0.543
A0CII1_PARTE	A0E2N3_PARTE	A0CII1	A0E2N3	Uncharacterized protein.	Uncharacterized protein.	0.545
A0DXT2_PARTE	A0BKI9_PARTE	A0DXT2	A0BKI9	Uncharacterized protein.	Uncharacterized protein.	0.545
A0DXT2_PARTE	A0CII1_PARTE	A0DXT2	A0CII1	Uncharacterized protein.	Uncharacterized protein.	0.543
A0DXT2_PARTE	A0E2N3_PARTE	A0DXT2	A0E2N3	Uncharacterized protein.	Uncharacterized protein.	0.545
A0E2N3_PARTE	A0BKI9_PARTE	A0E2N3	A0BKI9	Uncharacterized protein.	Uncharacterized protein.	0.543
A0E2N3_PARTE	A0CII1_PARTE	A0E2N3	A0CII1	Uncharacterized protein.	Uncharacterized protein.	0.545
A0E2N3_PARTE	A0DXT2_PARTE	A0E2N3	A0DXT2	Uncharacterized protein.	Uncharacterized protein.	0.545