(117 nodes) Helicase, C-terminal network (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0BDT5_PARTE	Uncharacterized protein. (1238 aa)
	A0BDD2_PARTE	Uncharacterized protein. (737 aa)
	A0BC93_PARTE	Uncharacterized protein. (1127 aa)
	A0BBE7_PARTE	Uncharacterized protein. (1472 aa)
	A0BAT4_PARTE	Uncharacterized protein. (651 aa)
	A0DCZ1_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (475 aa)
	A0DDY7_PARTE	Uncharacterized protein. (708 aa)
	A0DE61_PARTE	Uncharacterized protein. (963 aa)
	A0DH08_PARTE	Uncharacterized protein. (1127 aa)
	A0DK92_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (696 aa)
	A0DN31_PARTE	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (422 aa)
	A0DNE7_PARTE	Uncharacterized protein. (1135 aa)
	A0DS20_PARTE	Uncharacterized protein. (567 aa)
	A0DU09_PARTE	Uncharacterized protein. (3642 aa)
	A0DX38_PARTE	Uncharacterized protein. (971 aa)
	A0DXK8_PARTE	Uncharacterized protein. (431 aa)
	A0DXN3_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (680 aa)
	A0DXY5_PARTE	Uncharacterized protein. (1741 aa)
	A0DY20_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (451 aa)
	A0DYZ3_PARTE	Uncharacterized protein. (1292 aa)
	A0E003_PARTE	Uncharacterized protein. (616 aa)
	A0E037_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (660 aa)
	A0E144_PARTE	Uncharacterized protein. (743 aa)
	A0E2Y8_PARTE	Uncharacterized protein. (767 aa)
	A0E4U1_PARTE	Uncharacterized protein. (529 aa)
	A0E5L3_PARTE	Uncharacterized protein. (647 aa)
	A0E639_PARTE	Uncharacterized protein. (1472 aa)
	A0E7N9_PARTE	Uncharacterized protein. (1228 aa)
	A0E956_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (556 aa)
	A0E9E2_PARTE	Uncharacterized protein. (712 aa)
	A0EA02_PARTE	Uncharacterized protein. (957 aa)
	A0EAV2_PARTE	Uncharacterized protein. (429 aa)
	A0ED29_PARTE	Uncharacterized protein. (1111 aa)
	A0EFX5_PARTE	Uncharacterized protein. (1225 aa)
	A0EIJ0_PARTE	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (706 aa)
	Dcr1	Dicer-like ribonuclease with helicase and Rnase III domains; Belongs to the helicase family. Dicer subfamily. (1797 aa)
	Dcr2	Dicer-like ribonuclease with mutated helicase and Rnase III domains; Belongs to the helicase family. Dicer subfamily. (1596 aa)
	PTMB.400c	Nucleolar RNA helicase II, putative. (664 aa)
	PTMB.220	Nucleic acid helicase, putative. (1472 aa)
	PTMB.174c	RNA helicase, putative. (1157 aa)
	A0D836_PARTE	SECA_MOTOR_DEAD domain-containing protein. (1622 aa)
	A0D7Q3_PARTE	Uncharacterized protein. (361 aa)
	A0D6R6_PARTE	Uncharacterized protein. (429 aa)
	A0D4F7_PARTE	Helicase C-terminal domain-containing protein. (105 aa)
	A0D4B2_PARTE	Uncharacterized protein. (1059 aa)
	A0D361_PARTE	Uncharacterized protein. (813 aa)
	A0D315_PARTE	Uncharacterized protein. (1127 aa)
	A0D280_PARTE	Uncharacterized protein. (659 aa)
	A0D232_PARTE	Uncharacterized protein. (434 aa)
	A0CZH3_PARTE	Uncharacterized protein. (431 aa)
	A0CZ00_PARTE	Uncharacterized protein. (1024 aa)
	A0CYC7_PARTE	Uncharacterized protein. (1510 aa)
	A0CXW7_PARTE	Uncharacterized protein. (2116 aa)
	A0CXB7_PARTE	Uncharacterized protein. (1024 aa)
	A0CVG3_PARTE	Uncharacterized protein. (1014 aa)
	A0CVD5_PARTE	Uncharacterized protein. (485 aa)
	A0CVA2_PARTE	Uncharacterized protein. (1659 aa)
	A0CUN8_PARTE	RNA helicase. (579 aa)
	A0CUL6_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (604 aa)
	A0CTF1_PARTE	Uncharacterized protein. (767 aa)
	A0CSK6_PARTE	Uncharacterized protein. (1115 aa)
	A0CQU8_PARTE	Uncharacterized protein. (1123 aa)
	A0CPJ5_PARTE	Uncharacterized protein. (424 aa)
	A0CML2_PARTE	Uncharacterized protein. (1120 aa)
	A0CMG4_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (442 aa)
	A0CM98_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (493 aa)
	A0CIA5_PARTE	Uncharacterized protein. (1741 aa)
	A0CG74_PARTE	Uncharacterized protein. (395 aa)
	A0CE84_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (553 aa)
	A0CE10_PARTE	Uncharacterized protein. (1905 aa)
	A0CE04_PARTE	Uncharacterized protein. (395 aa)
	A0CCH7_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (402 aa)
	A0CBJ2_PARTE	Uncharacterized protein. (589 aa)
	A0CAA3_PARTE	Uncharacterized protein. (1210 aa)
	A0CA40_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (729 aa)
	A0C9B0_PARTE	Uncharacterized protein. (954 aa)
	A0C7L2_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (472 aa)
	A0C7G1_PARTE	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (889 aa)
	A0C768_PARTE	Uncharacterized protein. (1103 aa)
	A0C5B0_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (480 aa)
	A0C4P2_PARTE	Uncharacterized protein. (1030 aa)
	A0C3B5_PARTE	Uncharacterized protein. (1021 aa)
	A0C369_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (566 aa)
	A0C321_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (564 aa)
	A0C1Q2_PARTE	Uncharacterized protein. (708 aa)
	A0C187_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (408 aa)
	A0C090_PARTE	Uncharacterized protein. (654 aa)
	A0C015_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (532 aa)
	A0C011_PARTE	Uncharacterized protein. (1668 aa)
	A0BZ04_PARTE	Uncharacterized protein. (1006 aa)
	A0BYG8_PARTE	Uncharacterized protein. (757 aa)
	A0BXZ6_PARTE	SECA_MOTOR_DEAD domain-containing protein. (1021 aa)
	A0BWP0_PARTE	Uncharacterized protein. (1100 aa)
	A0BWN9_PARTE	Uncharacterized protein. (1133 aa)
	A0BRC7_PARTE	Uncharacterized protein. (1405 aa)
	A0BQ90_PARTE	Uncharacterized protein. (2066 aa)
	A0BPV0_PARTE	Uncharacterized protein. (471 aa)
	A0BMB8_PARTE	Uncharacterized protein. (761 aa)
	A0BLP2_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (542 aa)
	A0BKV6_PARTE	Uncharacterized protein. (2065 aa)
	A0BKU6_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (395 aa)
	A0BKU2_PARTE	Uncharacterized protein. (746 aa)
	A0BJ26_PARTE	Uncharacterized protein. (645 aa)
	A0BJ14_PARTE	Uncharacterized protein. (1299 aa)
	A0BIQ8_PARTE	Uncharacterized protein. (1486 aa)
	A0BH35_PARTE	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (667 aa)
	A0BGY3_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (472 aa)
	A0BG98_PARTE	Uncharacterized protein. (1215 aa)
	A0BEU9_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (395 aa)
	A0BEU6_PARTE	SECA_MOTOR_DEAD domain-containing protein. (1641 aa)
	A0BE02_PARTE	Uncharacterized protein; Belongs to the DEAD box helicase family. (475 aa)
	A0BDG4_PARTE	Uncharacterized protein. (1079 aa)
	A0D9S1_PARTE	Uncharacterized protein. (1508 aa)
	A0D9R8_PARTE	Helicase C-terminal domain-containing protein. (193 aa)
	A0D9L0_PARTE	Uncharacterized protein. (1013 aa)
	A0D8W7_PARTE	Uncharacterized protein. (987 aa)
	A0D8U1_PARTE	Uncharacterized protein. (485 aa)

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BAT4_PARTE	A0BBE7_PARTE	A0BAT4	A0BBE7	Uncharacterized protein.	Uncharacterized protein.	0.547
A0BAT4_PARTE	A0BEU9_PARTE	A0BAT4	A0BEU9	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.778
A0BAT4_PARTE	A0BG98_PARTE	A0BAT4	A0BG98	Uncharacterized protein.	Uncharacterized protein.	0.400
A0BAT4_PARTE	A0BIQ8_PARTE	A0BAT4	A0BIQ8	Uncharacterized protein.	Uncharacterized protein.	0.444
A0BAT4_PARTE	A0BKU6_PARTE	A0BAT4	A0BKU6	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.769
A0BAT4_PARTE	A0BKV6_PARTE	A0BAT4	A0BKV6	Uncharacterized protein.	Uncharacterized protein.	0.545
A0BAT4_PARTE	A0BLP2_PARTE	A0BAT4	A0BLP2	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.585
A0BAT4_PARTE	A0BPV0_PARTE	A0BAT4	A0BPV0	Uncharacterized protein.	Uncharacterized protein.	0.613
A0BAT4_PARTE	A0BQ90_PARTE	A0BAT4	A0BQ90	Uncharacterized protein.	Uncharacterized protein.	0.545
A0BAT4_PARTE	A0BYG8_PARTE	A0BAT4	A0BYG8	Uncharacterized protein.	Uncharacterized protein.	0.601
A0BAT4_PARTE	A0BZ04_PARTE	A0BAT4	A0BZ04	Uncharacterized protein.	Uncharacterized protein.	0.725
A0BAT4_PARTE	A0C090_PARTE	A0BAT4	A0C090	Uncharacterized protein.	Uncharacterized protein.	0.508
A0BAT4_PARTE	A0C1Q2_PARTE	A0BAT4	A0C1Q2	Uncharacterized protein.	Uncharacterized protein.	0.601
A0BAT4_PARTE	A0C321_PARTE	A0BAT4	A0C321	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.585
A0BAT4_PARTE	A0C369_PARTE	A0BAT4	A0C369	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.601
A0BAT4_PARTE	A0C3B5_PARTE	A0BAT4	A0C3B5	Uncharacterized protein.	Uncharacterized protein.	0.508
A0BAT4_PARTE	A0C9B0_PARTE	A0BAT4	A0C9B0	Uncharacterized protein.	Uncharacterized protein.	0.400
A0BAT4_PARTE	A0CA40_PARTE	A0BAT4	A0CA40	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.682
A0BAT4_PARTE	A0CAA3_PARTE	A0BAT4	A0CAA3	Uncharacterized protein.	Uncharacterized protein.	0.400
A0BAT4_PARTE	A0CBJ2_PARTE	A0BAT4	A0CBJ2	Uncharacterized protein.	Uncharacterized protein.	0.601