(10 nodes) DEAD-box helicase, OB fold network (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0C1Q2_PARTE	Uncharacterized protein. (708 aa)
	A0ED29_PARTE	Uncharacterized protein. (1111 aa)
	A0E754_PARTE	OB_NTP_bind domain-containing protein. (55 aa)
	A0E144_PARTE	Uncharacterized protein. (743 aa)
	A0E003_PARTE	Uncharacterized protein. (616 aa)
	A0D4B2_PARTE	Uncharacterized protein. (1059 aa)
	A0D281_PARTE	HA2 domain-containing protein. (364 aa)
	A0CSK6_PARTE	Uncharacterized protein. (1115 aa)
	A0CBJ2_PARTE	Uncharacterized protein. (589 aa)
	A0BZ04_PARTE	Uncharacterized protein. (1006 aa)

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BZ04_PARTE	A0C1Q2_PARTE	A0BZ04	A0C1Q2	Uncharacterized protein.	Uncharacterized protein.	0.475
A0BZ04_PARTE	A0CBJ2_PARTE	A0BZ04	A0CBJ2	Uncharacterized protein.	Uncharacterized protein.	0.483
A0BZ04_PARTE	A0CSK6_PARTE	A0BZ04	A0CSK6	Uncharacterized protein.	Uncharacterized protein.	0.453
A0BZ04_PARTE	A0D281_PARTE	A0BZ04	A0D281	Uncharacterized protein.	HA2 domain-containing protein.	0.953
A0BZ04_PARTE	A0D4B2_PARTE	A0BZ04	A0D4B2	Uncharacterized protein.	Uncharacterized protein.	0.953
A0BZ04_PARTE	A0E003_PARTE	A0BZ04	A0E003	Uncharacterized protein.	Uncharacterized protein.	0.453
A0BZ04_PARTE	A0E754_PARTE	A0BZ04	A0E754	Uncharacterized protein.	OB_NTP_bind domain-containing protein.	0.423
A0BZ04_PARTE	A0ED29_PARTE	A0BZ04	A0ED29	Uncharacterized protein.	Uncharacterized protein.	0.456
A0C1Q2_PARTE	A0BZ04_PARTE	A0C1Q2	A0BZ04	Uncharacterized protein.	Uncharacterized protein.	0.475
A0C1Q2_PARTE	A0D281_PARTE	A0C1Q2	A0D281	Uncharacterized protein.	HA2 domain-containing protein.	0.780
A0C1Q2_PARTE	A0D4B2_PARTE	A0C1Q2	A0D4B2	Uncharacterized protein.	Uncharacterized protein.	0.783
A0C1Q2_PARTE	A0E144_PARTE	A0C1Q2	A0E144	Uncharacterized protein.	Uncharacterized protein.	0.760
A0CBJ2_PARTE	A0BZ04_PARTE	A0CBJ2	A0BZ04	Uncharacterized protein.	Uncharacterized protein.	0.483
A0CBJ2_PARTE	A0D281_PARTE	A0CBJ2	A0D281	Uncharacterized protein.	HA2 domain-containing protein.	0.783
A0CBJ2_PARTE	A0D4B2_PARTE	A0CBJ2	A0D4B2	Uncharacterized protein.	Uncharacterized protein.	0.786
A0CBJ2_PARTE	A0E144_PARTE	A0CBJ2	A0E144	Uncharacterized protein.	Uncharacterized protein.	0.762
A0CSK6_PARTE	A0BZ04_PARTE	A0CSK6	A0BZ04	Uncharacterized protein.	Uncharacterized protein.	0.453
A0CSK6_PARTE	A0D281_PARTE	A0CSK6	A0D281	Uncharacterized protein.	HA2 domain-containing protein.	0.774
A0CSK6_PARTE	A0D4B2_PARTE	A0CSK6	A0D4B2	Uncharacterized protein.	Uncharacterized protein.	0.776
A0CSK6_PARTE	A0E144_PARTE	A0CSK6	A0E144	Uncharacterized protein.	Uncharacterized protein.	0.745