(10 nodes) RNA-binding domain, S1 network (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0E5U7_PARTE	Uncharacterized protein. (1495 aa)
	A0ED29_PARTE	Uncharacterized protein. (1111 aa)
	A0CKE9_PARTE	Uncharacterized protein. (184 aa)
	A0CNJ0_PARTE	Uncharacterized protein. (410 aa)
	A0CSK6_PARTE	Uncharacterized protein. (1115 aa)
	A0DQZ2_PARTE	S1 motif domain-containing protein. (186 aa)
	A0EDJ3_PARTE	S1 motif domain-containing protein. (320 aa)
	PTMB.323	Pre-rRNA processing protein RRP5, putative. (1444 aa)
	A0CIG6_PARTE	S1 domain-containing protein. (274 aa)
	A0E462_PARTE	S1 motif domain-containing protein. (320 aa)

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0CIG6_PARTE	A0CSK6_PARTE	A0CIG6	A0CSK6	S1 domain-containing protein.	Uncharacterized protein.	0.739
A0CIG6_PARTE	A0DQZ2_PARTE	A0CIG6	A0DQZ2	S1 domain-containing protein.	S1 motif domain-containing protein.	0.999
A0CIG6_PARTE	A0E5U7_PARTE	A0CIG6	A0E5U7	S1 domain-containing protein.	Uncharacterized protein.	0.980
A0CIG6_PARTE	A0ED29_PARTE	A0CIG6	A0ED29	S1 domain-containing protein.	Uncharacterized protein.	0.739
A0CIG6_PARTE	PTMB.323	A0CIG6	Q6BFP9	S1 domain-containing protein.	Pre-rRNA processing protein RRP5, putative.	0.980
A0CKE9_PARTE	A0CNJ0_PARTE	A0CKE9	A0CNJ0	Uncharacterized protein.	Uncharacterized protein.	0.540
A0CNJ0_PARTE	A0CKE9_PARTE	A0CNJ0	A0CKE9	Uncharacterized protein.	Uncharacterized protein.	0.540
A0CSK6_PARTE	A0CIG6_PARTE	A0CSK6	A0CIG6	Uncharacterized protein.	S1 domain-containing protein.	0.739
A0CSK6_PARTE	A0DQZ2_PARTE	A0CSK6	A0DQZ2	Uncharacterized protein.	S1 motif domain-containing protein.	0.757
A0CSK6_PARTE	A0E5U7_PARTE	A0CSK6	A0E5U7	Uncharacterized protein.	Uncharacterized protein.	0.845
A0CSK6_PARTE	PTMB.323	A0CSK6	Q6BFP9	Uncharacterized protein.	Pre-rRNA processing protein RRP5, putative.	0.845
A0DQZ2_PARTE	A0CIG6_PARTE	A0DQZ2	A0CIG6	S1 motif domain-containing protein.	S1 domain-containing protein.	0.999
A0DQZ2_PARTE	A0CSK6_PARTE	A0DQZ2	A0CSK6	S1 motif domain-containing protein.	Uncharacterized protein.	0.757
A0DQZ2_PARTE	A0E5U7_PARTE	A0DQZ2	A0E5U7	S1 motif domain-containing protein.	Uncharacterized protein.	0.978
A0DQZ2_PARTE	A0ED29_PARTE	A0DQZ2	A0ED29	S1 motif domain-containing protein.	Uncharacterized protein.	0.757
A0DQZ2_PARTE	PTMB.323	A0DQZ2	Q6BFP9	S1 motif domain-containing protein.	Pre-rRNA processing protein RRP5, putative.	0.978
A0E462_PARTE	A0EDJ3_PARTE	A0E462	A0EDJ3	S1 motif domain-containing protein.	S1 motif domain-containing protein.	0.900
A0E5U7_PARTE	A0CIG6_PARTE	A0E5U7	A0CIG6	Uncharacterized protein.	S1 domain-containing protein.	0.980
A0E5U7_PARTE	A0CSK6_PARTE	A0E5U7	A0CSK6	Uncharacterized protein.	Uncharacterized protein.	0.845
A0E5U7_PARTE	A0DQZ2_PARTE	A0E5U7	A0DQZ2	Uncharacterized protein.	S1 motif domain-containing protein.	0.978