20 items (Paramecium tetraurelia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0EDT0_PARTE	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (438 aa)
	A0EFI6_PARTE	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (471 aa)
	A0BL60_PARTE	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (433 aa)
	A0BN83_PARTE	Tr-type G domain-containing protein. (357 aa)
	A0C641_PARTE	Tr-type G domain-containing protein. (836 aa)
	A0C9U4_PARTE	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (721 aa)
	A0CAG8_PARTE	Tr-type G domain-containing protein. (836 aa)
	A0CDU0_PARTE	Tr-type G domain-containing protein. (646 aa)
	A0CEH0_PARTE	Tr-type G domain-containing protein. (830 aa)
	A0CT20_PARTE	Tr-type G domain-containing protein. (265 aa)
	A0CTP4_PARTE	Tr-type G domain-containing protein. (211 aa)
	A0D5J3_PARTE	Tr-type G domain-containing protein. (784 aa)
	A0DF70_PARTE	Tr-type G domain-containing protein. (646 aa)
	A0DGW7_PARTE	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (721 aa)
	A0DJ56_PARTE	Tr-type G domain-containing protein. (324 aa)
	A0DPV3_PARTE	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (437 aa)
	EF-1a	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (437 aa)
	A0DRB1_PARTE	Uncharacterized protein. (1348 aa)
	A0DW80_PARTE	Tr-type G domain-containing protein. (185 aa)
	A0ED84_PARTE	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (606 aa)

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BL60_PARTE	A0C641_PARTE	A0BL60	A0C641	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Tr-type G domain-containing protein.	0.650
A0BL60_PARTE	A0C9U4_PARTE	A0BL60	A0C9U4	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.643
A0BL60_PARTE	A0CAG8_PARTE	A0BL60	A0CAG8	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Tr-type G domain-containing protein.	0.650
A0BL60_PARTE	A0CEH0_PARTE	A0BL60	A0CEH0	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Tr-type G domain-containing protein.	0.650
A0BL60_PARTE	A0CT20_PARTE	A0BL60	A0CT20	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Tr-type G domain-containing protein.	0.650
A0BL60_PARTE	A0CTP4_PARTE	A0BL60	A0CTP4	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Tr-type G domain-containing protein.	0.650
A0BL60_PARTE	A0DGW7_PARTE	A0BL60	A0DGW7	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.643
A0BL60_PARTE	A0DJ56_PARTE	A0BL60	A0DJ56	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Tr-type G domain-containing protein.	0.650
A0BL60_PARTE	A0DW80_PARTE	A0BL60	A0DW80	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Tr-type G domain-containing protein.	0.650
A0BN83_PARTE	A0C641_PARTE	A0BN83	A0C641	Tr-type G domain-containing protein.	Tr-type G domain-containing protein.	0.836
A0BN83_PARTE	A0C9U4_PARTE	A0BN83	A0C9U4	Tr-type G domain-containing protein.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.836
A0BN83_PARTE	A0CAG8_PARTE	A0BN83	A0CAG8	Tr-type G domain-containing protein.	Tr-type G domain-containing protein.	0.836
A0BN83_PARTE	A0CDU0_PARTE	A0BN83	A0CDU0	Tr-type G domain-containing protein.	Tr-type G domain-containing protein.	0.427
A0BN83_PARTE	A0CEH0_PARTE	A0BN83	A0CEH0	Tr-type G domain-containing protein.	Tr-type G domain-containing protein.	0.836
A0BN83_PARTE	A0CT20_PARTE	A0BN83	A0CT20	Tr-type G domain-containing protein.	Tr-type G domain-containing protein.	0.836
A0BN83_PARTE	A0CTP4_PARTE	A0BN83	A0CTP4	Tr-type G domain-containing protein.	Tr-type G domain-containing protein.	0.836
A0BN83_PARTE	A0D5J3_PARTE	A0BN83	A0D5J3	Tr-type G domain-containing protein.	Tr-type G domain-containing protein.	0.559
A0BN83_PARTE	A0DF70_PARTE	A0BN83	A0DF70	Tr-type G domain-containing protein.	Tr-type G domain-containing protein.	0.427
A0BN83_PARTE	A0DGW7_PARTE	A0BN83	A0DGW7	Tr-type G domain-containing protein.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.836
A0BN83_PARTE	A0DJ56_PARTE	A0BN83	A0DJ56	Tr-type G domain-containing protein.	Tr-type G domain-containing protein.	0.836