(15 nodes) Type 1 protein exporter network (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0BMH6_PARTE	ABC transporter domain-containing protein. (474 aa)
	A0BX05_PARTE	Uncharacterized protein. (1312 aa)
	A0BMH5_PARTE	ABC transporter domain-containing protein. (170 aa)
	A0E4T2_PARTE	Uncharacterized protein. (602 aa)
	A0E0M9_PARTE	Uncharacterized protein. (771 aa)
	A0DK47_PARTE	Uncharacterized protein. (769 aa)
	A0DE47_PARTE	Uncharacterized protein. (1352 aa)
	A0DAE0_PARTE	Uncharacterized protein. (1289 aa)
	A0D9N3_PARTE	Uncharacterized protein. (600 aa)
	A0D368_PARTE	Uncharacterized protein. (1282 aa)
	A0CMN7_PARTE	Uncharacterized protein. (1312 aa)
	A0CH03_PARTE	Uncharacterized protein. (1289 aa)
	A0CA67_PARTE	Uncharacterized protein. (568 aa)
	A0C216_PARTE	Uncharacterized protein. (1341 aa)
	A0C048_PARTE	Uncharacterized protein. (585 aa)

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BMH5_PARTE	A0C048_PARTE	A0BMH5	A0C048	ABC transporter domain-containing protein.	Uncharacterized protein.	0.547
A0BMH5_PARTE	A0CA67_PARTE	A0BMH5	A0CA67	ABC transporter domain-containing protein.	Uncharacterized protein.	0.713
A0BMH5_PARTE	A0D9N3_PARTE	A0BMH5	A0D9N3	ABC transporter domain-containing protein.	Uncharacterized protein.	0.544
A0BMH5_PARTE	A0DK47_PARTE	A0BMH5	A0DK47	ABC transporter domain-containing protein.	Uncharacterized protein.	0.537
A0BMH5_PARTE	A0E0M9_PARTE	A0BMH5	A0E0M9	ABC transporter domain-containing protein.	Uncharacterized protein.	0.538
A0BMH5_PARTE	A0E4T2_PARTE	A0BMH5	A0E4T2	ABC transporter domain-containing protein.	Uncharacterized protein.	0.528
A0BMH6_PARTE	A0C048_PARTE	A0BMH6	A0C048	ABC transporter domain-containing protein.	Uncharacterized protein.	0.588
A0BMH6_PARTE	A0CA67_PARTE	A0BMH6	A0CA67	ABC transporter domain-containing protein.	Uncharacterized protein.	0.717
A0BMH6_PARTE	A0D9N3_PARTE	A0BMH6	A0D9N3	ABC transporter domain-containing protein.	Uncharacterized protein.	0.585
A0BMH6_PARTE	A0DK47_PARTE	A0BMH6	A0DK47	ABC transporter domain-containing protein.	Uncharacterized protein.	0.572
A0BMH6_PARTE	A0E0M9_PARTE	A0BMH6	A0E0M9	ABC transporter domain-containing protein.	Uncharacterized protein.	0.573
A0BMH6_PARTE	A0E4T2_PARTE	A0BMH6	A0E4T2	ABC transporter domain-containing protein.	Uncharacterized protein.	0.567
A0BX05_PARTE	A0C048_PARTE	A0BX05	A0C048	Uncharacterized protein.	Uncharacterized protein.	0.525
A0BX05_PARTE	A0CA67_PARTE	A0BX05	A0CA67	Uncharacterized protein.	Uncharacterized protein.	0.673
A0BX05_PARTE	A0D9N3_PARTE	A0BX05	A0D9N3	Uncharacterized protein.	Uncharacterized protein.	0.525
A0BX05_PARTE	A0DK47_PARTE	A0BX05	A0DK47	Uncharacterized protein.	Uncharacterized protein.	0.529
A0BX05_PARTE	A0E0M9_PARTE	A0BX05	A0E0M9	Uncharacterized protein.	Uncharacterized protein.	0.530
A0BX05_PARTE	A0E4T2_PARTE	A0BX05	A0E4T2	Uncharacterized protein.	Uncharacterized protein.	0.513
A0C048_PARTE	A0BMH5_PARTE	A0C048	A0BMH5	Uncharacterized protein.	ABC transporter domain-containing protein.	0.547
A0C048_PARTE	A0BMH6_PARTE	A0C048	A0BMH6	Uncharacterized protein.	ABC transporter domain-containing protein.	0.588