13 items (Paramecium tetraurelia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0EBY7_PARTE	Uncharacterized protein. (292 aa)
	A0BNM4_PARTE	Uncharacterized protein. (292 aa)
	A0C6I2_PARTE	Uncharacterized protein. (218 aa)
	A0CJV7_PARTE	Uncharacterized protein. (541 aa)
	A0CMZ6_PARTE	Uncharacterized protein. (548 aa)
	PTMB.180c	Phosphatase regulatory subunit, putative. (549 aa)
	A0CWR9_PARTE	Uncharacterized protein. (152 aa)
	A0D227_PARTE	EF-hand domain-containing protein. (475 aa)
	A0D4G3_PARTE	Uncharacterized protein. (475 aa)
	A0DAV6_PARTE	Uncharacterized protein. (207 aa)
	A0DQ90_PARTE	Uncharacterized protein. (152 aa)
	A0DVC9_PARTE	EF-hand domain-containing protein. (197 aa)
	Ptcen14	Centrin-related-protein,putative. (207 aa)

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0C6I2_PARTE	A0D227_PARTE	A0C6I2	A0D227	Uncharacterized protein.	EF-hand domain-containing protein.	0.449
A0C6I2_PARTE	A0D4G3_PARTE	A0C6I2	A0D4G3	Uncharacterized protein.	Uncharacterized protein.	0.449
A0CJV7_PARTE	A0CMZ6_PARTE	A0CJV7	A0CMZ6	Uncharacterized protein.	Uncharacterized protein.	0.543
A0CJV7_PARTE	PTMB.180c	A0CJV7	Q6BG43	Uncharacterized protein.	Phosphatase regulatory subunit, putative.	0.544
A0CMZ6_PARTE	A0CJV7_PARTE	A0CMZ6	A0CJV7	Uncharacterized protein.	Uncharacterized protein.	0.543
A0CMZ6_PARTE	PTMB.180c	A0CMZ6	Q6BG43	Uncharacterized protein.	Phosphatase regulatory subunit, putative.	0.544
A0D227_PARTE	A0C6I2_PARTE	A0D227	A0C6I2	EF-hand domain-containing protein.	Uncharacterized protein.	0.449
A0D4G3_PARTE	A0C6I2_PARTE	A0D4G3	A0C6I2	Uncharacterized protein.	Uncharacterized protein.	0.449
PTMB.180c	A0CJV7_PARTE	Q6BG43	A0CJV7	Phosphatase regulatory subunit, putative.	Uncharacterized protein.	0.544
PTMB.180c	A0CMZ6_PARTE	Q6BG43	A0CMZ6	Phosphatase regulatory subunit, putative.	Uncharacterized protein.	0.544