(29 nodes) Leucine-rich repeat network (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0ECA2_PARTE	Uncharacterized protein. (1035 aa)
	A0EDX9_PARTE	Uncharacterized protein. (395 aa)
	A0EDI3_PARTE	Uncharacterized protein. (676 aa)
	A0E3R3_PARTE	Uncharacterized protein. (390 aa)
	A0E2R1_PARTE	Uncharacterized protein. (495 aa)
	A0DNM1_PARTE	Uncharacterized protein. (269 aa)
	A0DLJ8_PARTE	Uncharacterized protein. (222 aa)
	A0DKX9_PARTE	Uncharacterized protein. (425 aa)
	A0DJL2_PARTE	Uncharacterized protein. (201 aa)
	A0DGJ0_PARTE	Uncharacterized protein. (235 aa)
	A0DBR6_PARTE	Uncharacterized protein. (336 aa)
	A0DB59_PARTE	Uncharacterized protein. (210 aa)
	A0D7D2_PARTE	Uncharacterized protein. (201 aa)
	A0D704_PARTE	Uncharacterized protein. (321 aa)
	A0D3E7_PARTE	Uncharacterized protein. (209 aa)
	A0CSY7_PARTE	Uncharacterized protein. (676 aa)
	A0CM73_PARTE	Uncharacterized protein. (206 aa)
	A0CIE5_PARTE	Uncharacterized protein. (481 aa)
	A0CH44_PARTE	Uncharacterized protein. (213 aa)
	A0CGE1_PARTE	Uncharacterized protein. (328 aa)
	A0CF78_PARTE	Uncharacterized protein. (378 aa)
	A0CAG0_PARTE	Uncharacterized protein. (394 aa)
	A0C636_PARTE	Uncharacterized protein. (394 aa)
	A0C5F2_PARTE	Uncharacterized protein. (227 aa)
	A0BWP9_PARTE	Uncharacterized protein. (183 aa)
	A0BQ04_PARTE	Uncharacterized protein. (979 aa)
	A0BPC2_PARTE	Uncharacterized protein. (206 aa)
	A0BKU1_PARTE	Uncharacterized protein. (364 aa)
	A0BHQ6_PARTE	Uncharacterized protein. (222 aa)

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BPC2_PARTE	A0C636_PARTE	A0BPC2	A0C636	Uncharacterized protein.	Uncharacterized protein.	0.531
A0BPC2_PARTE	A0CAG0_PARTE	A0BPC2	A0CAG0	Uncharacterized protein.	Uncharacterized protein.	0.531
A0BQ04_PARTE	A0C636_PARTE	A0BQ04	A0C636	Uncharacterized protein.	Uncharacterized protein.	0.531
A0BQ04_PARTE	A0CAG0_PARTE	A0BQ04	A0CAG0	Uncharacterized protein.	Uncharacterized protein.	0.531
A0C636_PARTE	A0BPC2_PARTE	A0C636	A0BPC2	Uncharacterized protein.	Uncharacterized protein.	0.531
A0C636_PARTE	A0BQ04_PARTE	A0C636	A0BQ04	Uncharacterized protein.	Uncharacterized protein.	0.531
A0C636_PARTE	A0CAG0_PARTE	A0C636	A0CAG0	Uncharacterized protein.	Uncharacterized protein.	0.947
A0C636_PARTE	A0CGE1_PARTE	A0C636	A0CGE1	Uncharacterized protein.	Uncharacterized protein.	0.531
A0C636_PARTE	A0CIE5_PARTE	A0C636	A0CIE5	Uncharacterized protein.	Uncharacterized protein.	0.471
A0C636_PARTE	A0CSY7_PARTE	A0C636	A0CSY7	Uncharacterized protein.	Uncharacterized protein.	0.619
A0C636_PARTE	A0D7D2_PARTE	A0C636	A0D7D2	Uncharacterized protein.	Uncharacterized protein.	0.531
A0C636_PARTE	A0DBR6_PARTE	A0C636	A0DBR6	Uncharacterized protein.	Uncharacterized protein.	0.531
A0C636_PARTE	A0DJL2_PARTE	A0C636	A0DJL2	Uncharacterized protein.	Uncharacterized protein.	0.531
A0C636_PARTE	A0DKX9_PARTE	A0C636	A0DKX9	Uncharacterized protein.	Uncharacterized protein.	0.448
A0C636_PARTE	A0DNM1_PARTE	A0C636	A0DNM1	Uncharacterized protein.	Uncharacterized protein.	0.613
A0C636_PARTE	A0E3R3_PARTE	A0C636	A0E3R3	Uncharacterized protein.	Uncharacterized protein.	0.531
A0C636_PARTE	A0ECA2_PARTE	A0C636	A0ECA2	Uncharacterized protein.	Uncharacterized protein.	0.531
A0C636_PARTE	A0EDI3_PARTE	A0C636	A0EDI3	Uncharacterized protein.	Uncharacterized protein.	0.620
A0C636_PARTE	A0EDX9_PARTE	A0C636	A0EDX9	Uncharacterized protein.	Uncharacterized protein.	0.531
A0CAG0_PARTE	A0BPC2_PARTE	A0CAG0	A0BPC2	Uncharacterized protein.	Uncharacterized protein.	0.531