(5 nodes) Mixed, incl. Cell morphogenesis, and Cell cycle protein network (Brevundimonas naejangsanensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mrdB	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. (385 aa)
	ANF54394.1	Penicillin-binding protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (667 aa)
	ANF54396.1	Rod shape-determining protein MreC; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)
	ANF54397.1	Rod shape-determining protein; Functions in MreBCD complex in some organisms; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
	ANF55265.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (376 aa)

Your Current Organism:

Brevundimonas naejangsanensis

NCBI taxonomy Id: 588932
Other names: B. naejangsanensis, Brevundimonas naejangsanensis Kang et al. 2009, CCUG 57609, DSM 23858, KCTC 22631, strain BIO-TAS2-2

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANF54394.1	ANF54396.1	DA69_06360	DA69_06370	Penicillin-binding protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rod shape-determining protein MreC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
ANF54394.1	ANF54397.1	DA69_06360	DA69_06375	Penicillin-binding protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rod shape-determining protein; Functions in MreBCD complex in some organisms; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
ANF54394.1	ANF55265.1	DA69_06360	DA69_11200	Penicillin-binding protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.622
ANF54394.1	mrdB	DA69_06360	DA69_06355	Penicillin-binding protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.995
ANF54396.1	ANF54394.1	DA69_06370	DA69_06360	Rod shape-determining protein MreC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
ANF54396.1	ANF54397.1	DA69_06370	DA69_06375	Rod shape-determining protein MreC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rod shape-determining protein; Functions in MreBCD complex in some organisms; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
ANF54396.1	ANF55265.1	DA69_06370	DA69_11200	Rod shape-determining protein MreC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.700
ANF54396.1	mrdB	DA69_06370	DA69_06355	Rod shape-determining protein MreC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.952
ANF54397.1	ANF54394.1	DA69_06375	DA69_06360	Rod shape-determining protein; Functions in MreBCD complex in some organisms; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
ANF54397.1	ANF54396.1	DA69_06375	DA69_06370	Rod shape-determining protein; Functions in MreBCD complex in some organisms; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rod shape-determining protein MreC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
ANF54397.1	ANF55265.1	DA69_06375	DA69_11200	Rod shape-determining protein; Functions in MreBCD complex in some organisms; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.976
ANF54397.1	mrdB	DA69_06375	DA69_06355	Rod shape-determining protein; Functions in MreBCD complex in some organisms; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.925
ANF55265.1	ANF54394.1	DA69_11200	DA69_06360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Penicillin-binding protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.622
ANF55265.1	ANF54396.1	DA69_11200	DA69_06370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Rod shape-determining protein MreC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
ANF55265.1	ANF54397.1	DA69_11200	DA69_06375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Rod shape-determining protein; Functions in MreBCD complex in some organisms; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
ANF55265.1	mrdB	DA69_11200	DA69_06355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.733
mrdB	ANF54394.1	DA69_06355	DA69_06360	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	Penicillin-binding protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
mrdB	ANF54396.1	DA69_06355	DA69_06370	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	Rod shape-determining protein MreC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
mrdB	ANF54397.1	DA69_06355	DA69_06375	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	Rod shape-determining protein; Functions in MreBCD complex in some organisms; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
mrdB	ANF55265.1	DA69_06355	DA69_11200	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.733