(53 nodes) Mixed, incl. Signal, and Aldo/keto reductase family network (Brevundimonas naejangsanensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANF53344.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (630 aa)
	ANF53393.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
	ANF53430.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (687 aa)
	ANF53433.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	ANF53434.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
	ANF53435.1	PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
	ANF53480.1	Phage tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)
	ANF53481.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
	ANF53556.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)
	ANF53682.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	ANF53688.1	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
	ANF53689.1	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa)
	ANF53695.1	Fructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
	ANF53732.1	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
	ANF55827.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	ANF53860.1	phosphoribosyl-ATP pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (99 aa)
	ANF53937.1	Autotransporter outer membrane beta-barrel domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1093 aa)
	ANF53983.1	Rotamase; Derived by automated computational analysis using gene prediction method: Protein Homology. (641 aa)
	ANF54135.1	Peptidase S1; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	ANF54209.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	ANF54226.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
	ANF54305.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
	ANF54306.1	D-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	ANF55894.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
	ANF54491.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
	ANF55914.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (901 aa)
	ANF54532.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
	ANF54535.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (537 aa)
	ANF54536.1	DUF4139 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (472 aa)
	ANF54559.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (917 aa)
	ANF54575.1	Type II secretion system protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
	ANF54613.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	ANF54636.1	Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
	ANF54801.1	DUF4153 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (600 aa)
	ANF54847.1	Tat pathway signal sequence domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	tilS	tRNA lysidine(34) synthetase TilS; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (463 aa)
	ANF55014.1	Tol-pal system protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	ANF55015.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
	ANF55034.1	S1/P1 Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	ANF55179.1	Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
	ANF55180.1	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
	ANF55181.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
	ANF55295.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (574 aa)
	ANF55344.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	ANF55358.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	ANF55365.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)
	ANF55993.1	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	ANF56004.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
	ANF55527.1	S-type pyocin family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	ANF55648.1	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)
	ANF55659.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (932 aa)
	ANF55670.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (756 aa)
	ANF55685.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)

Your Current Organism:

Brevundimonas naejangsanensis

NCBI taxonomy Id: 588932
Other names: B. naejangsanensis, Brevundimonas naejangsanensis Kang et al. 2009, CCUG 57609, DSM 23858, KCTC 22631, strain BIO-TAS2-2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANF53344.1	ANF53393.1	DA69_00275	DA69_00555	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660
ANF53344.1	ANF53430.1	DA69_00275	DA69_00760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
ANF53344.1	ANF53480.1	DA69_00275	DA69_01045	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
ANF53344.1	ANF53556.1	DA69_00275	DA69_01490	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
ANF53344.1	ANF53732.1	DA69_00275	DA69_02560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
ANF53344.1	ANF53937.1	DA69_00275	DA69_03745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Autotransporter outer membrane beta-barrel domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
ANF53344.1	ANF54209.1	DA69_00275	DA69_05300	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
ANF53344.1	ANF54306.1	DA69_00275	DA69_05860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
ANF53344.1	ANF54532.1	DA69_00275	DA69_07135	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
ANF53344.1	ANF54535.1	DA69_00275	DA69_07150	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
ANF53344.1	ANF54536.1	DA69_00275	DA69_07155	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF4139 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
ANF53344.1	ANF54559.1	DA69_00275	DA69_07285	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.599
ANF53344.1	ANF54575.1	DA69_00275	DA69_07375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion system protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.589
ANF53344.1	ANF54636.1	DA69_00275	DA69_07690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
ANF53344.1	ANF54801.1	DA69_00275	DA69_08640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF4153 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.672
ANF53344.1	ANF55014.1	DA69_00275	DA69_09800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tol-pal system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
ANF53344.1	ANF55034.1	DA69_00275	DA69_09900	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	S1/P1 Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
ANF53344.1	ANF55181.1	DA69_00275	DA69_10720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
ANF53344.1	ANF55295.1	DA69_00275	DA69_11370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
ANF53344.1	ANF55344.1	DA69_00275	DA69_11675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664