(10 nodes) Mixed, incl. O-Antigen ligase, and Glycosyltransferase 2-like network (Brevundimonas naejangsanensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANF55794.1	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	ANF53844.1	Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
	ANF53911.1	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	ANF53912.1	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (481 aa)
	ANF53913.1	hfsB; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	ANF53914.1	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	ANF53915.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	ANF53916.1	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)
	ANF55847.1	UDP-phosphate glucose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (509 aa)
	ANF54485.1	O-antigen polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)

Your Current Organism:

Brevundimonas naejangsanensis

NCBI taxonomy Id: 588932
Other names: B. naejangsanensis, Brevundimonas naejangsanensis Kang et al. 2009, CCUG 57609, DSM 23858, KCTC 22631, strain BIO-TAS2-2

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANF53844.1	ANF53911.1	DA69_03195	DA69_03600	Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
ANF53844.1	ANF53912.1	DA69_03195	DA69_03605	Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
ANF53844.1	ANF53913.1	DA69_03195	DA69_03610	Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	hfsB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.712
ANF53844.1	ANF53914.1	DA69_03195	DA69_03615	Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
ANF53844.1	ANF53915.1	DA69_03195	DA69_03620	Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
ANF53844.1	ANF53916.1	DA69_03195	DA69_03625	Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
ANF53844.1	ANF55794.1	DA69_03195	DA69_01300	Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
ANF53844.1	ANF55847.1	DA69_03195	DA69_03630	Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-phosphate glucose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
ANF53911.1	ANF53844.1	DA69_03600	DA69_03195	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
ANF53911.1	ANF53912.1	DA69_03600	DA69_03605	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
ANF53911.1	ANF53913.1	DA69_03600	DA69_03610	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	hfsB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.826
ANF53911.1	ANF53914.1	DA69_03600	DA69_03615	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
ANF53911.1	ANF53915.1	DA69_03600	DA69_03620	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.715
ANF53911.1	ANF53916.1	DA69_03600	DA69_03625	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.593
ANF53911.1	ANF54485.1	DA69_03600	DA69_06880	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	O-antigen polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
ANF53911.1	ANF55794.1	DA69_03600	DA69_01300	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.525
ANF53911.1	ANF55847.1	DA69_03600	DA69_03630	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-phosphate glucose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
ANF53912.1	ANF53844.1	DA69_03605	DA69_03195	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
ANF53912.1	ANF53911.1	DA69_03605	DA69_03600	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
ANF53912.1	ANF53913.1	DA69_03605	DA69_03610	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	hfsB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947