(5 nodes) Type II protein secretion system complex network (Brevundimonas naejangsanensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANF54571.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (134 aa)
	ANF54572.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (367 aa)
	ANF54573.1	General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
	ANF54574.1	Type II secretion system protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)
	ANF55921.1	Type II secretion system protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)

Your Current Organism:

Brevundimonas naejangsanensis

NCBI taxonomy Id: 588932
Other names: B. naejangsanensis, Brevundimonas naejangsanensis Kang et al. 2009, CCUG 57609, DSM 23858, KCTC 22631, strain BIO-TAS2-2

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANF54571.1	ANF54572.1	DA69_07350	DA69_07355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.969
ANF54571.1	ANF54573.1	DA69_07350	DA69_07360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.695
ANF54571.1	ANF54574.1	DA69_07350	DA69_07365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Type II secretion system protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.695
ANF54571.1	ANF55921.1	DA69_07350	DA69_07370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Type II secretion system protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
ANF54572.1	ANF54571.1	DA69_07355	DA69_07350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.969
ANF54572.1	ANF54573.1	DA69_07355	DA69_07360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
ANF54572.1	ANF54574.1	DA69_07355	DA69_07365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Type II secretion system protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
ANF54572.1	ANF55921.1	DA69_07355	DA69_07370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Type II secretion system protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
ANF54573.1	ANF54571.1	DA69_07360	DA69_07350	General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.695
ANF54573.1	ANF54572.1	DA69_07360	DA69_07355	General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.947
ANF54573.1	ANF54574.1	DA69_07360	DA69_07365	General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion system protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ANF54573.1	ANF55921.1	DA69_07360	DA69_07370	General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion system protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ANF54574.1	ANF54571.1	DA69_07365	DA69_07350	Type II secretion system protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.695
ANF54574.1	ANF54572.1	DA69_07365	DA69_07355	Type II secretion system protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.953
ANF54574.1	ANF54573.1	DA69_07365	DA69_07360	Type II secretion system protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ANF54574.1	ANF55921.1	DA69_07365	DA69_07370	Type II secretion system protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion system protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ANF55921.1	ANF54571.1	DA69_07370	DA69_07350	Type II secretion system protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.686
ANF55921.1	ANF54572.1	DA69_07370	DA69_07355	Type II secretion system protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.929
ANF55921.1	ANF54573.1	DA69_07370	DA69_07360	Type II secretion system protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ANF55921.1	ANF54574.1	DA69_07370	DA69_07365	Type II secretion system protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion system protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998