(21 nodes) Cellular polysaccharide biosynthetic process network (Brevundimonas naejangsanensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DA69_00010	ABC transporter; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)
	ANF55793.1	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	ANF53579.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyltransferase 26 family. (285 aa)
	ANF53872.1	Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family. (385 aa)
	ANF53912.1	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (481 aa)
	ANF53915.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	ANF53916.1	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)
	ANF55857.1	UDP-galactopyranose mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (758 aa)
	ANF54157.1	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa)
	kdsA	3-deoxy-8-phosphooctulonate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the KdsA family. (283 aa)
	ANF54615.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
	ANF54825.1	3-deoxy-D-manno-octulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. (433 aa)
	ANF54911.1	Heptosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	ANF54945.1	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
	ANF55180.1	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
	ANF55198.1	3-deoxy-manno-octulosonate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
	ANF55493.1	Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family. (386 aa)
	ANF55579.1	Heptosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	ANF55719.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
	ANF55749.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (841 aa)
	ANF55751.1	Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (294 aa)

Your Current Organism:

Brevundimonas naejangsanensis

NCBI taxonomy Id: 588932
Other names: B. naejangsanensis, Brevundimonas naejangsanensis Kang et al. 2009, CCUG 57609, DSM 23858, KCTC 22631, strain BIO-TAS2-2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANF53579.1	ANF53916.1	DA69_01645	DA69_03625	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyltransferase 26 family.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572
ANF53579.1	ANF55749.1	DA69_01645	DA69_14025	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyltransferase 26 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.542
ANF53872.1	ANF53916.1	DA69_03370	DA69_03625	Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.477
ANF53872.1	ANF55749.1	DA69_03370	DA69_14025	Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.547
ANF53872.1	ANF55751.1	DA69_03370	DA69_14035	Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.	Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	0.455
ANF53872.1	DA69_00010	DA69_03370	DA69_00010	Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.	ABC transporter; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
ANF53912.1	ANF53915.1	DA69_03605	DA69_03620	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.836
ANF53912.1	ANF53916.1	DA69_03605	DA69_03625	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
ANF53912.1	ANF54615.1	DA69_03605	DA69_07580	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
ANF53912.1	ANF54945.1	DA69_03605	DA69_09420	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
ANF53912.1	ANF55180.1	DA69_03605	DA69_10715	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.610
ANF53912.1	ANF55749.1	DA69_03605	DA69_14025	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.631
ANF53915.1	ANF53912.1	DA69_03620	DA69_03605	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.836
ANF53915.1	ANF53916.1	DA69_03620	DA69_03625	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
ANF53915.1	ANF54615.1	DA69_03620	DA69_07580	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
ANF53915.1	ANF54945.1	DA69_03620	DA69_09420	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
ANF53915.1	ANF55180.1	DA69_03620	DA69_10715	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
ANF53916.1	ANF53579.1	DA69_03625	DA69_01645	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyltransferase 26 family.	0.572
ANF53916.1	ANF53872.1	DA69_03625	DA69_03370	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.	0.477
ANF53916.1	ANF53912.1	DA69_03625	DA69_03605	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856