(9 nodes) ATP-binding cassette (ABC) transporter complex network (Brevundimonas naejangsanensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANF55772.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	lptB	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	ANF53371.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	ANF53806.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (513 aa)
	ANF55839.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
	ANF54696.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (844 aa)
	ANF54728.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)
	ANF55654.1	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	ANF55726.1	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)

Your Current Organism:

Brevundimonas naejangsanensis

NCBI taxonomy Id: 588932
Other names: B. naejangsanensis, Brevundimonas naejangsanensis Kang et al. 2009, CCUG 57609, DSM 23858, KCTC 22631, strain BIO-TAS2-2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANF53371.1	ANF54728.1	DA69_00425	DA69_08250	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
ANF53371.1	ANF55654.1	DA69_00425	DA69_13450	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.474
ANF53806.1	ANF54696.1	DA69_02985	DA69_08060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
ANF54696.1	ANF53806.1	DA69_08060	DA69_02985	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.928
ANF54728.1	ANF53371.1	DA69_08250	DA69_00425	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
ANF54728.1	ANF55654.1	DA69_08250	DA69_13450	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
ANF54728.1	lptB	DA69_08250	DA69_00190	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.626
ANF55654.1	ANF53371.1	DA69_13450	DA69_00425	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.474
ANF55654.1	ANF54728.1	DA69_13450	DA69_08250	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
lptB	ANF54728.1	DA69_00190	DA69_08250	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.626