(38 nodes) Cellular carbohydrate metabolic process network (Brevundimonas naejangsanensis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	glk	Glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial glucokinase family. (322 aa)
	ANF55180.1	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
	ANF55198.1	3-deoxy-manno-octulosonate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
	cysQ	3'(2'),5'-bisphosphate nucleotidase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family. (269 aa)
	ANF55493.1	Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family. (386 aa)
	ANF55494.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	ANF56014.1	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate. (480 aa)
	ANF55600.1	Histidinol-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	ANF55709.1	Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. (261 aa)
	ANF55711.1	Trehalose-6-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa)
	ANF55719.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
	ANF55749.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (841 aa)
	ANF55751.1	Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (294 aa)
	ANF55579.1	Heptosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	DA69_00010	ABC transporter; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)
	ANF55793.1	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	ANF53579.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyltransferase 26 family. (285 aa)
	ANF53586.1	Amylo-alpha-1,6-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (715 aa)
	ANF53695.1	Fructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
	ANF53872.1	Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family. (385 aa)
	ANF53912.1	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (481 aa)
	ANF53915.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	ANF53916.1	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)
	ANF55857.1	UDP-galactopyranose mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (758 aa)
	ANF54157.1	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa)
	kdsA	3-deoxy-8-phosphooctulonate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the KdsA family. (283 aa)
	hldE	Bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family. (486 aa)
	ANF54615.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
	glcB	Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. (733 aa)
	ANF54746.1	Inositol monophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the inositol monophosphatase superfamily. (268 aa)
	ANF54819.1	3'(2'),5'-bisphosphate nucleotidase CysQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
	ANF54820.1	Inositol monophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (83 aa)
	ANF54825.1	3-deoxy-D-manno-octulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. (433 aa)
	ANF54911.1	Heptosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	ANF54916.1	1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
	ANF54945.1	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
	rbsK	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (281 aa)
	edd	Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. (629 aa)

Your Current Organism:

Brevundimonas naejangsanensis

NCBI taxonomy Id: 588932
Other names: B. naejangsanensis, Brevundimonas naejangsanensis Kang et al. 2009, CCUG 57609, DSM 23858, KCTC 22631, strain BIO-TAS2-2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANF53579.1	ANF53916.1	DA69_01645	DA69_03625	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyltransferase 26 family.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572
ANF53579.1	ANF55749.1	DA69_01645	DA69_14025	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyltransferase 26 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.542
ANF53586.1	ANF55709.1	DA69_01680	DA69_13805	Amylo-alpha-1,6-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.	0.426
ANF53586.1	ANF55793.1	DA69_01680	DA69_01175	Amylo-alpha-1,6-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
ANF53872.1	ANF53916.1	DA69_03370	DA69_03625	Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.477
ANF53872.1	ANF55494.1	DA69_03370	DA69_12555	Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
ANF53872.1	ANF55749.1	DA69_03370	DA69_14025	Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.547
ANF53872.1	ANF55751.1	DA69_03370	DA69_14035	Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.	Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	0.455
ANF53872.1	DA69_00010	DA69_03370	DA69_00010	Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.	ABC transporter; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
ANF53912.1	ANF53915.1	DA69_03605	DA69_03620	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.836
ANF53912.1	ANF53916.1	DA69_03605	DA69_03625	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
ANF53912.1	ANF54615.1	DA69_03605	DA69_07580	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
ANF53912.1	ANF54945.1	DA69_03605	DA69_09420	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
ANF53912.1	ANF55180.1	DA69_03605	DA69_10715	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.610
ANF53912.1	ANF55749.1	DA69_03605	DA69_14025	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.631
ANF53915.1	ANF53912.1	DA69_03620	DA69_03605	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.836
ANF53915.1	ANF53916.1	DA69_03620	DA69_03625	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
ANF53915.1	ANF54615.1	DA69_03620	DA69_07580	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
ANF53915.1	ANF54945.1	DA69_03620	DA69_09420	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
ANF53915.1	ANF55180.1	DA69_03620	DA69_10715	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436