22 items (Tilletiopsis washingtonensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A316ZAY7	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (462 aa)
	A0A316ZBR9	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (5324 aa)
	A0A316ZEL5	Brix-domain-containing protein. (444 aa)
	A0A316ZHD9	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
	A0A316ZLG3	Brix-domain-containing protein. (334 aa)
	A0A316Z4E5	Brix-domain-containing protein. (529 aa)
	A0A316Z4Z9	Rsa3 domain-containing protein. (278 aa)
	A0A316Z5A2	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (351 aa)
	A0A316Z5S8	DEAD-domain-containing protein. (930 aa)
	A0A316Z7A9	Putative RPL10-60S large subunit ribosomal protein L10. (220 aa)
	A0A316Z7C8	Exonuclease domain-containing protein. (361 aa)
	A0A316Z8J4	Uncharacterized protein. (438 aa)
	A0A316Z9V5	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (299 aa)
	A0A316ZA41	RNA helicase. (756 aa)
	A0A316ZA49	C3H1-type domain-containing protein. (696 aa)
	A0A316ZAE5	WD40 repeat-like protein. (460 aa)
	A0A316ZAQ4	Putative RSA4-WD-repeat protein. (622 aa)
	A0A316Z0T2	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (156 aa)
	A0A316Z0Y3	Nucleic acid-binding protein. (1595 aa)
	A0A316Z1P2	P-loop containing nucleoside triphosphate hydrolase protein. (691 aa)
	A0A316Z352	Uncharacterized protein. (1262 aa)
	A0A316Z424	Putative RPL5-60S large subunit ribosomal protein L5.e. (296 aa)

Your Current Organism:

Tilletiopsis washingtonensis

NCBI taxonomy Id: 58919
Other names: ATCC 36489, CBS 544.50, JCM 8362, T. washingtonensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A316Z0T2	A0A316Z0Y3	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Nucleic acid-binding protein.	0.994
A0A316Z0T2	A0A316Z1P2	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	P-loop containing nucleoside triphosphate hydrolase protein.	0.893
A0A316Z0T2	A0A316Z352	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Uncharacterized protein.	0.592
A0A316Z0T2	A0A316Z424	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Putative RPL5-60S large subunit ribosomal protein L5.e.	0.999
A0A316Z0T2	A0A316Z5A2	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.999
A0A316Z0T2	A0A316Z5S8	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	DEAD-domain-containing protein.	0.436
A0A316Z0T2	A0A316Z7A9	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Putative RPL10-60S large subunit ribosomal protein L10.	0.999
A0A316Z0T2	A0A316Z7C8	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Exonuclease domain-containing protein.	0.544
A0A316Z0T2	A0A316Z9V5	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.995
A0A316Z0T2	A0A316ZA41	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	RNA helicase.	0.771
A0A316Z0T2	A0A316ZAQ4	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Putative RSA4-WD-repeat protein.	0.800
A0A316Z0T2	A0A316ZAY7	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.978
A0A316Z0T2	A0A316ZBR9	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	0.592
A0A316Z0T2	A0A316ZEL5	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Brix-domain-containing protein.	0.896
A0A316Z0T2	A0A316ZHD9	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
A0A316Z0T2	A0A316ZLG3	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Brix-domain-containing protein.	0.893
A0A316Z0Y3	A0A316Z0T2	Nucleic acid-binding protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.994
A0A316Z0Y3	A0A316Z1P2	Nucleic acid-binding protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.784
A0A316Z0Y3	A0A316Z352	Nucleic acid-binding protein.	Uncharacterized protein.	0.592
A0A316Z0Y3	A0A316Z424	Nucleic acid-binding protein.	Putative RPL5-60S large subunit ribosomal protein L5.e.	0.981