STRINGSTRING
Ferp_0287 Ferp_0287 Ferp_0288 Ferp_0288 Ferp_0788 Ferp_0788 Ferp_0892 Ferp_0892 Ferp_0893 Ferp_0893 Ferp_0894 Ferp_0894 Ferp_0895 Ferp_0895 Ferp_0978 Ferp_0978 Ferp_1004 Ferp_1004 Ferp_1036 Ferp_1036 Ferp_1189 Ferp_1189 sucC sucC sucD sucD Ferp_1489 Ferp_1489 Ferp_1490 Ferp_1490 Ferp_1580 Ferp_1580 Ferp_1581 Ferp_1581 Ferp_1823 Ferp_1823 Ferp_1824 Ferp_1824 Ferp_1825 Ferp_1825 Ferp_1826 Ferp_1826 Ferp_1831 Ferp_1831 Ferp_1832 Ferp_1832 Ferp_1836 Ferp_1836 Ferp_1944 Ferp_1944 Ferp_2323 Ferp_2323 Ferp_2330 Ferp_2330 Ferp_2331 Ferp_2331 Ferp_2450 Ferp_2450 Ferp_2554 Ferp_2554 Ferp_2555 Ferp_2555
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ferp_0287PFAM: ATP-grasp domain protein; KEGG: afu:AF0932 hypothetical protein. (197 aa)
Ferp_0288PFAM: CoA-binding domain protein; KEGG: afu:AF0932 hypothetical protein. (459 aa)
Ferp_0788PFAM: AMP-dependent synthetase and ligase; KEGG: chy:CHY_0659 acetyl-CoA synthetase. (634 aa)
Ferp_0892TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: afu:AF1699 pyruvate ferredoxin oxidoreductase subunit gamma. (193 aa)
Ferp_0893TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: afu:AF1700 pyruvate ferredoxin oxidoreductase, subunit delta (PorD). (97 aa)
Ferp_0894PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Transketolase domain protein; KEGG: afu:AF1701 pyruvate ferredoxin oxidoreductase, subunit alpha (PorA). (391 aa)
Ferp_0895PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: afu:AF1702 pyruvate ferredoxin oxidoreductase, subunit beta (PorB). (292 aa)
Ferp_0978KEGG: afu:AF2416 acetyl-CoA acetyltransferase. (382 aa)
Ferp_1004TIGRFAM: acetyl-CoA acetyltransferase; KEGG: cbf:CLI_3339 acetyl-CoA acetyltransferase. (393 aa)
Ferp_1036Propanoyl-CoA C-acyltransferase; KEGG: afu:AF0018 3-ketoacyl-CoA thiolase (AcaB-1). (400 aa)
Ferp_1189Propanoyl-CoA C-acyltransferase; KEGG: afu:AF0438 acetyl-CoA acetyltransferase. (388 aa)
sucCsuccinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (381 aa)
sucDsuccinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (292 aa)
Ferp_1489PFAM: ATP-grasp domain protein; KEGG: pfu:PF1787 acetyl-CoA synthetase. (217 aa)
Ferp_1490PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: sfu:Sfum_2466 CoA-binding domain-containing protein. (440 aa)
Ferp_1580methylmalonyl-CoA mutase, large subunit; KEGG: afu:AF1288a methylmalonyl-CoA mutase N-terminal domain-containing protein; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase. (568 aa)
Ferp_1581PFAM: cobalamin B12-binding domain protein; KEGG: afu:AF1288b methylmalonyl-CoA mutase C-terminal domain-containing protein. (141 aa)
Ferp_1823PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: afu:AF2052 2-ketoisovalerate ferredoxin oxidoreductase, subunit beta (VorB). (278 aa)
Ferp_1824PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: afu:AF2053 2-ketoisovalerate ferredoxin oxidoreductase, subunit alpha (VorA). (374 aa)
Ferp_1825TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mvn:Mevan_0815 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit. (83 aa)
Ferp_1826TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: afu:AF2055 2-ketoisovalerate ferredoxin oxidoreductase, subunit gamma (VorG). (164 aa)
Ferp_1831PFAM: cobalamin B12-binding domain protein; KEGG: afu:AF2219 methylmalonyl-CoA mutase, subunit alpha, C-terminus (mcmA2). (141 aa)
Ferp_1832TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: afu:AF2218 hypothetical protein. (131 aa)
Ferp_1836KEGG: afu:AF2215 methylmalonyl-CoA mutase, subunit alpha, N-terminus (mcmA1); TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase. (548 aa)
Ferp_1944Propanoyl-CoA C-acyltransferase; PFAM: Beta-ketoacyl synthase; KEGG: afu:AF0283 acetyl-CoA acetyltransferase. (392 aa)
Ferp_2323Propanoyl-CoA C-acyltransferase; KEGG: mth:MTH793 acetyl-CoA acetyltransferase. (388 aa)
Ferp_2330PFAM: cobalamin B12-binding domain protein; KEGG: afu:AF2219 methylmalonyl-CoA mutase, subunit alpha, C-terminus (mcmA2). (138 aa)
Ferp_2331KEGG: eba:ebA2060 methylmalonyl-CoA mutase subunit alpha; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase. (539 aa)
Ferp_2450TIGRFAM: acetyl-CoA acetyltransferase; KEGG: afu:AF1197 3-ketoacyl-CoA thiolase (FadA-2). (425 aa)
Ferp_2554KEGG: afu:AF0967 acetyl-CoA acetyltransferase. (400 aa)
Ferp_2555KEGG: afu:AF0968 acetyl-CoA acetyltransferase. (380 aa)
Your Current Organism:
Ferroglobus placidus
NCBI taxonomy Id: 589924
Other names: F. placidus DSM 10642, Ferroglobus placidus AEDII12DO, Ferroglobus placidus DSM 10642, Ferroglobus placidus str. DSM 10642, Ferroglobus placidus strain DSM 10642
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