STRINGSTRING
Ferp_0251 Ferp_0251 Ferp_0311 Ferp_0311 Ferp_0312 Ferp_0312 Ferp_0313 Ferp_0313 Ferp_0314 Ferp_0314 Ferp_0361 Ferp_0361 Ferp_0647 Ferp_0647 Ferp_0832 Ferp_0832 Ferp_0833 Ferp_0833 Ferp_0962 Ferp_0962 Ferp_0978 Ferp_0978 Ferp_1004 Ferp_1004 Ferp_1036 Ferp_1036 Ferp_1072 Ferp_1072 Ferp_1075 Ferp_1075 cheB cheB Ferp_1077 Ferp_1077 Ferp_1079 Ferp_1079 Ferp_1080 Ferp_1080 Ferp_1088 Ferp_1088 Ferp_1189 Ferp_1189 Ferp_1268 Ferp_1268 Ferp_1613 Ferp_1613 Ferp_1664 Ferp_1664 Ferp_1725 Ferp_1725 Ferp_1934 Ferp_1934 Ferp_1944 Ferp_1944 Ferp_1990 Ferp_1990 Ferp_2323 Ferp_2323 Ferp_2450 Ferp_2450 Ferp_2554 Ferp_2554 Ferp_2555 Ferp_2555
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ferp_0251PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: afu:AF0449 response regulator. (123 aa)
Ferp_0311KEGG: gme:Gmet_0329 nitrate reductase, alpha subunit; TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region. (1189 aa)
Ferp_0312TIGRFAM: nitrate reductase, beta subunit; KEGG: gme:Gmet_0330 respiratory nitrate reductase beta subunit. (485 aa)
Ferp_0313TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: gme:Gmet_0331 respiratory nitrate reductase chaperone NarJ. (190 aa)
Ferp_0314PFAM: Nitrate reductase gamma subunit; KEGG: gme:Gmet_0332 respiratory nitrate reductase gamma subunit. (233 aa)
Ferp_0361PFAM: nitrogen regulatory protein P-II; KEGG: afu:AF0978 nitrogen regulatory protein P-II (GlnB-1); Belongs to the P(II) protein family. (109 aa)
Ferp_0647PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sus:Acid_5652 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein. (252 aa)
Ferp_0832Hydrogenase (NiFe) small subunit HydA; KEGG: afu:AF1381 F420-nonreducing hydrogenase (VhtG); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit. (350 aa)
Ferp_0833PFAM: nickel-dependent hydrogenase large subunit; KEGG: afu:AF1380 F420-nonreducing hydrogenase (VhtA); Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (568 aa)
Ferp_0962TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: afu:AF1356 phosphate ABC transporter, periplasmic phosphate-binding protein (PhoX). (317 aa)
Ferp_0978KEGG: afu:AF2416 acetyl-CoA acetyltransferase. (382 aa)
Ferp_1004TIGRFAM: acetyl-CoA acetyltransferase; KEGG: cbf:CLI_3339 acetyl-CoA acetyltransferase. (393 aa)
Ferp_1036Propanoyl-CoA C-acyltransferase; KEGG: afu:AF0018 3-ketoacyl-CoA thiolase (AcaB-1). (400 aa)
Ferp_1072MCP methyltransferase, CheR-type; KEGG: afu:AF1037 chemotaxis protein methyltransferase (CheR); PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type. (267 aa)
Ferp_1075CheA signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; P2 response regulator binding domain protein; Hpt domain protein; CheW domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; KEGG: afu:AF1040 chemotaxis histidine kinase (CheA). (666 aa)
cheBResponse regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (348 aa)
Ferp_1077PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: afu:AF1042 chemotaxis response regulator (CheY). (120 aa)
Ferp_1079PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: afu:AF1044 purine-binding chemotaxis protein (CheW). (158 aa)
Ferp_1080PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: afu:AF1045 methyl-accepting chemotaxis protein (TlpC-2). (382 aa)
Ferp_1088PFAM: Nitrate reductase gamma subunit; KEGG: dsy:DSY4518 hypothetical protein. (232 aa)
Ferp_1189Propanoyl-CoA C-acyltransferase; KEGG: afu:AF0438 acetyl-CoA acetyltransferase. (388 aa)
Ferp_1268PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: afw:Anae109_3086 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein. (235 aa)
Ferp_1613KEGG: deb:DehaBAV1_0257 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit. (355 aa)
Ferp_1664TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: afu:AF0949 glutamine synthetase (GlnA). (480 aa)
Ferp_1725PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: afu:AF2249 response regulator. (118 aa)
Ferp_1934PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: afu:AF1835 hypothetical protein. (280 aa)
Ferp_1944Propanoyl-CoA C-acyltransferase; PFAM: Beta-ketoacyl synthase; KEGG: afu:AF0283 acetyl-CoA acetyltransferase. (392 aa)
Ferp_1990KEGG: afu:AF1045 methyl-accepting chemotaxis protein (TlpC-2); TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; PAS domain containing protein. (625 aa)
Ferp_2323Propanoyl-CoA C-acyltransferase; KEGG: mth:MTH793 acetyl-CoA acetyltransferase. (388 aa)
Ferp_2450TIGRFAM: acetyl-CoA acetyltransferase; KEGG: afu:AF1197 3-ketoacyl-CoA thiolase (FadA-2). (425 aa)
Ferp_2554KEGG: afu:AF0967 acetyl-CoA acetyltransferase. (400 aa)
Ferp_2555KEGG: afu:AF0968 acetyl-CoA acetyltransferase. (380 aa)
Your Current Organism:
Ferroglobus placidus
NCBI taxonomy Id: 589924
Other names: F. placidus DSM 10642, Ferroglobus placidus AEDII12DO, Ferroglobus placidus DSM 10642, Ferroglobus placidus str. DSM 10642, Ferroglobus placidus strain DSM 10642
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