(3 nodes) Porin domain superfamily network (Dickeya zeae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACZ76496.1	PFAM: porin Gram-negative type; KEGG: dda:Dd703_1637 porin gram-negative type; Belongs to the Gram-negative porin family. (361 aa)
	ACZ76494.1	PFAM: porin Gram-negative type; KEGG: dda:Dd703_1637 porin gram-negative type. (359 aa)
	ACZ76495.1	PFAM: porin Gram-negative type; KEGG: dze:Dd1591_1666 porin gram-negative type. (361 aa)

Your Current Organism:

Dickeya zeae

NCBI taxonomy Id: 590409
Other names: D. zeae Ech586, Dickeya dadantii Ech586, Dickeya zeae Ech586

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACZ76494.1	ACZ76495.1	Dd586_1628	Dd586_1629	PFAM: porin Gram-negative type; KEGG: dda:Dd703_1637 porin gram-negative type.	PFAM: porin Gram-negative type; KEGG: dze:Dd1591_1666 porin gram-negative type.	0.902
ACZ76494.1	ACZ76496.1	Dd586_1628	Dd586_1630	PFAM: porin Gram-negative type; KEGG: dda:Dd703_1637 porin gram-negative type.	PFAM: porin Gram-negative type; KEGG: dda:Dd703_1637 porin gram-negative type; Belongs to the Gram-negative porin family.	0.903
ACZ76495.1	ACZ76494.1	Dd586_1629	Dd586_1628	PFAM: porin Gram-negative type; KEGG: dze:Dd1591_1666 porin gram-negative type.	PFAM: porin Gram-negative type; KEGG: dda:Dd703_1637 porin gram-negative type.	0.902
ACZ76495.1	ACZ76496.1	Dd586_1629	Dd586_1630	PFAM: porin Gram-negative type; KEGG: dze:Dd1591_1666 porin gram-negative type.	PFAM: porin Gram-negative type; KEGG: dda:Dd703_1637 porin gram-negative type; Belongs to the Gram-negative porin family.	0.901
ACZ76496.1	ACZ76494.1	Dd586_1630	Dd586_1628	PFAM: porin Gram-negative type; KEGG: dda:Dd703_1637 porin gram-negative type; Belongs to the Gram-negative porin family.	PFAM: porin Gram-negative type; KEGG: dda:Dd703_1637 porin gram-negative type.	0.903
ACZ76496.1	ACZ76495.1	Dd586_1630	Dd586_1629	PFAM: porin Gram-negative type; KEGG: dda:Dd703_1637 porin gram-negative type; Belongs to the Gram-negative porin family.	PFAM: porin Gram-negative type; KEGG: dze:Dd1591_1666 porin gram-negative type.	0.901