(11 nodes) Tetracyclin repressor-like, C-terminal domain superfamily network (Dickeya zeae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACZ77551.1	PFAM: regulatory protein TetR; KEGG: dda:Dd703_2513 transcriptional regulator, TetR family. (197 aa)
	ACZ76724.1	PFAM: regulatory protein TetR; KEGG: dda:Dd703_1814 transcriptional regulator, TetR family. (225 aa)
	ACZ76303.1	Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: bpy:Bphyt_6640 hypothetical protein. (204 aa)
	slmA	Transcriptional regulator, TetR family; Required for nucleoid occlusion (NO) phenomenon, which prevents Z-ring formation and cell division over the nucleoid. Acts as a DNA-associated cell division inhibitor that binds simultaneously chromosomal DNA and FtsZ, and disrupts the assembly of FtsZ polymers. SlmA-DNA-binding sequences (SBS) are dispersed on non-Ter regions of the chromosome, preventing FtsZ polymerization at these regions. (198 aa)
	ACZ75939.1	PFAM: Tetracycline transcriptional repressor MAATS-type domain protein; regulatory protein TetR; KEGG: dze:Dd1591_3046 transcriptional regulator, TetR family. (216 aa)
	ACZ75466.1	PFAM: regulatory protein TetR; KEGG: dze:Dd1591_3493 transcriptional regulator, TetR family. (193 aa)
	ACZ76282.1	PFAM: regulatory protein TetR; KEGG: sbp:Sbal223_2172 transcriptional regulator, TetR family. (189 aa)
	ACZ76276.1	PFAM: regulatory protein TetR; KEGG: dze:Dd1591_3319 transcriptional regulator, TetR family. (205 aa)
	ACZ76266.1	PFAM: regulatory protein TetR; KEGG: pct:PC1_2715 transcriptional regulator, TetR family. (188 aa)
	ACZ77719.1	PFAM: regulatory protein TetR; KEGG: dze:Dd1591_2113 transcriptional regulator, TetR family. (207 aa)
	ACZ77684.1	PFAM: regulatory protein TetR; KEGG: mei:Msip34_1343 transcriptional regulator, TetR family. (192 aa)

Your Current Organism:

Dickeya zeae

NCBI taxonomy Id: 590409
Other names: D. zeae Ech586, Dickeya dadantii Ech586, Dickeya zeae Ech586

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACZ75466.1	ACZ76303.1	Dd586_0572	Dd586_1430	PFAM: regulatory protein TetR; KEGG: dze:Dd1591_3493 transcriptional regulator, TetR family.	Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: bpy:Bphyt_6640 hypothetical protein.	0.421
ACZ76266.1	ACZ76303.1	Dd586_1390	Dd586_1430	PFAM: regulatory protein TetR; KEGG: pct:PC1_2715 transcriptional regulator, TetR family.	Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: bpy:Bphyt_6640 hypothetical protein.	0.444
ACZ76282.1	ACZ76303.1	Dd586_1407	Dd586_1430	PFAM: regulatory protein TetR; KEGG: sbp:Sbal223_2172 transcriptional regulator, TetR family.	Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: bpy:Bphyt_6640 hypothetical protein.	0.422
ACZ76303.1	ACZ75466.1	Dd586_1430	Dd586_0572	Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: bpy:Bphyt_6640 hypothetical protein.	PFAM: regulatory protein TetR; KEGG: dze:Dd1591_3493 transcriptional regulator, TetR family.	0.421
ACZ76303.1	ACZ76266.1	Dd586_1430	Dd586_1390	Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: bpy:Bphyt_6640 hypothetical protein.	PFAM: regulatory protein TetR; KEGG: pct:PC1_2715 transcriptional regulator, TetR family.	0.444
ACZ76303.1	ACZ76282.1	Dd586_1430	Dd586_1407	Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: bpy:Bphyt_6640 hypothetical protein.	PFAM: regulatory protein TetR; KEGG: sbp:Sbal223_2172 transcriptional regulator, TetR family.	0.422