STRINGSTRING
Celf_0078 Celf_0078 xylB xylB xylA xylA Celf_0581 Celf_0581 Celf_0869 Celf_0869 Celf_0870 Celf_0870 Celf_0871 Celf_0871 araA araA Celf_0873 Celf_0873 Celf_0874 Celf_0874 Celf_0875 Celf_0875 Celf_0876 Celf_0876 Celf_3758 Celf_3758
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Celf_0078PFAM: ROK family protein; KEGG: kra:Krad_1023 ROK family protein. (382 aa)
xylBKEGG: xylulokinase; TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like. (482 aa)
xylAKEGG: xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel; Belongs to the xylose isomerase family. (395 aa)
Celf_0581PFAM: ROK family protein; KEGG: nml:Namu_0180 ROK family protein. (468 aa)
Celf_0869KEGG: jde:Jden_0495 transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI. (356 aa)
Celf_0870PFAM: Carbohydrate kinase, FGGY-like; KEGG: carbohydrate kinase, FGGY-like protein. (532 aa)
Celf_0871PFAM: class II aldolase/adducin family protein; KEGG: class II aldolase/adducin family protein. (256 aa)
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (502 aa)
Celf_0873KEGG: hypothetical protein. (62 aa)
Celf_0874PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_0561 putative acetyltransferase. (172 aa)
Celf_0875PFAM: regulatory protein TetR; KEGG: xce:Xcel_0416 transcriptional regulator, TetR family. (210 aa)
Celf_0876KEGG: gob:Gobs_4817 modification methylase, HemK family; TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small. (289 aa)
Celf_3758PFAM: class II aldolase/adducin family protein; KEGG: ribulose-5-phosphate 4-epimerase-like epimerase or aldolase. (222 aa)
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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