STRINGSTRING
Celf_2138 Celf_2138 Celf_0136 Celf_0136 Celf_0153 Celf_0153 Celf_0170 Celf_0170 Celf_0171 Celf_0171 Celf_0342 Celf_0342 Celf_0362 Celf_0362 Celf_0474 Celf_0474 Celf_0513 Celf_0513 Celf_0524 Celf_0524 Celf_0567 Celf_0567 Celf_0632 Celf_0632 Celf_0663 Celf_0663 Celf_0681 Celf_0681 Celf_0778 Celf_0778 Celf_0852 Celf_0852 Celf_0863 Celf_0863 Celf_0867 Celf_0867 Celf_0988 Celf_0988 rpoB rpoB rpoC rpoC rpoA rpoA Celf_1109 Celf_1109 Celf_1270 Celf_1270 Celf_1447 Celf_1447 Celf_1512 Celf_1512 rnj rnj Celf_1627 Celf_1627 dnaE2 dnaE2 Celf_1762 Celf_1762 Celf_1904 Celf_1904 Celf_1908 Celf_1908 rpoZ rpoZ Celf_2399 Celf_2399 rpmA rpmA Celf_2663 Celf_2663 Celf_2782 Celf_2782 Celf_2882 Celf_2882 Celf_2908 Celf_2908 Celf_2970 Celf_2970 Celf_2997 Celf_2997 Celf_3114 Celf_3114 Celf_3190 Celf_3190 Celf_3362 Celf_3362 Celf_3392 Celf_3392 Celf_3477 Celf_3477 Celf_3478 Celf_3478 Celf_3487 Celf_3487 Celf_3529 Celf_3529 Celf_3530 Celf_3530 Celf_3536 Celf_3536 Celf_3557 Celf_3557 Celf_3587 Celf_3587 Celf_3660 Celf_3660 Celf_3674 Celf_3674 Celf_3771 Celf_3771 Celf_3790 Celf_3790 sigA sigA dnaG dnaG Celf_2307 Celf_2307 Celf_2353 Celf_2353 Celf_2391 Celf_2391
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Celf_2138PFAM: Domain of unknown function DUF1801; KEGG: bcv:Bcav_0133 domain of unknown function DUF1801. (142 aa)
Celf_0136Putative RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: sro:Sros_5547 ECF subfamily RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2. (404 aa)
Celf_0153KEGG: cwo:Cwoe_5550 putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2. (420 aa)
Celf_0170PFAM: transposase IS3/IS911 family protein; KEGG: mmi:MMAR_4592 transposase. (94 aa)
Celf_0171PFAM: Integrase catalytic region; KEGG: kse:Ksed_20160 transposase. (293 aa)
Celf_0342KEGG: putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein. (431 aa)
Celf_0362RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rer:RER_27120 RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein. (195 aa)
Celf_0474KEGG: cwo:Cwoe_3324 putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2. (418 aa)
Celf_0513PFAM: ATP-binding region ATPase domain protein; KEGG: signal transduction histidine kinase, LytS. (137 aa)
Celf_0524KEGG: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein. (236 aa)
Celf_0567KEGG: gob:Gobs_2481 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2. (289 aa)
Celf_0632KEGG: hypothetical protein. (104 aa)
Celf_0663KEGG: RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein. (296 aa)
Celf_0681RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rer:RER_27120 RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein. (179 aa)
Celf_0778KEGG: gob:Gobs_0648 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein. (190 aa)
Celf_0852KEGG: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein. (179 aa)
Celf_0863KEGG: fre:Franean1_6964 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein. (409 aa)
Celf_0867KEGG: fra:Francci3_0196 secretion protein HlyD. (731 aa)
Celf_0988TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: xce:Xcel_0614 RNA polymerase, sigma-24 subunit, ECF subfamily. (209 aa)
rpoBDNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1168 aa)
rpoCDNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1288 aa)
rpoADNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (336 aa)
Celf_1109KEGG: bcv:Bcav_3019 hypothetical protein. (69 aa)
Celf_1270KEGG: hypothetical protein. (191 aa)
Celf_1447PFAM: protein of unknown function DUF74; KEGG: rsa:RSal33209_2955 hypothetical protein; Belongs to the UPF0145 family. (128 aa)
Celf_1512RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (296 aa)
rnjRNA-metabolising metallo-beta-lactamase; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (561 aa)
Celf_1627DNA polymerase III, alpha subunit; SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type. (1179 aa)
dnaE2DNA polymerase III, alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. (1192 aa)
Celf_1762PFAM: Domain of unknown function DUF1801; KEGG: xce:Xcel_1701 domain of unknown function DUF1801. (131 aa)
Celf_1904KEGG: xce:Xcel_3288 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein. (168 aa)
Celf_1908KEGG: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2. (161 aa)
rpoZDNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (87 aa)
Celf_2399ATP-binding region ATPase domain protein; KEGG: putative anti-sigma regulatory factor, serine/threonine protein kinase; manually curated; PFAM: ATP-binding region ATPase domain protein. (169 aa)
rpmAKEGG: ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (85 aa)
Celf_2663KEGG: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2. (261 aa)
Celf_2782KEGG: hypothetical protein. (101 aa)
Celf_2882KEGG: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2. (198 aa)
Celf_2908PFAM: Domain of unknown function DUF1801; KEGG: aau:AAur_0600 hypothetical protein. (145 aa)
Celf_2970PFAM: transposase IS3/IS911 family protein; KEGG: kra:Krad_2458 transposase IS3/IS911 family protein. (256 aa)
Celf_2997KEGG: sco:SCO6307 cyclase SCIF309c. (339 aa)
Celf_3114KEGG: putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2. (442 aa)
Celf_3190PFAM: Protein of unknown function DUF2599; KEGG: protein of unknown function (DUF2599). (272 aa)
Celf_3362KEGG: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2. (216 aa)
Celf_3392PFAM: transcription factor WhiB; KEGG: transcription factor WhiB. (72 aa)
Celf_3477PFAM: transposase IS3/IS911 family protein; KEGG: mmi:MMAR_4592 transposase. (94 aa)
Celf_3478PFAM: Integrase catalytic region; KEGG: kse:Ksed_20160 transposase. (293 aa)
Celf_3487KEGG: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2. (1279 aa)
Celf_3529KEGG: hypothetical protein. (419 aa)
Celf_3530KEGG: hypothetical protein. (192 aa)
Celf_3536KEGG: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein. (177 aa)
Celf_3557RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: svi:Svir_09630 RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, sigma-E family; SMART: regulatory protein LuxR; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa)
Celf_3587KEGG: cms:CMS_2704 putative regulator. (134 aa)
Celf_3660RNA polymerase, sigma-24 subunit, ECF subfamily; Manually curated; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: rer:RER_27120 RNA polymerase ECF-type sigma factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein. (200 aa)
Celf_3674KEGG: lxx:Lxx16560 hypothetical protein. (377 aa)
Celf_3771KEGG: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2. (186 aa)
Celf_3790KEGG: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2. (183 aa)
sigARNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (538 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (672 aa)
Celf_2307TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: deoxyguanosinetriphosphate triphosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; Belongs to the dGTPase family. Type 2 subfamily. (427 aa)
Celf_2353KEGG: bcv:Bcav_1746 integral membrane protein. (334 aa)
Celf_2391KEGG: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2. (332 aa)
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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