STRINGSTRING
Celf_3113 Celf_3113 Celf_3156 Celf_3156 Celf_3633 Celf_3633 Celf_3330 Celf_3330 Celf_3157 Celf_3157 Celf_0398 Celf_0398 Celf_0438 Celf_0438 Celf_1340 Celf_1340 Celf_2403 Celf_2403 Celf_3155 Celf_3155
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Celf_3113KEGG: glycoside hydrolase family 16; PFAM: glycoside hydrolase family 16; Ricin B lectin; SMART: Ricin B lectin. (424 aa)
Celf_3156Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; Ricin B lectin; KEGG: endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10; Ricin B lectin. (493 aa)
Celf_3633PFAM: Ricin B lectin; KEGG: putative carbohydrate-binding protein with Ig-like domain, F5/8 type C domain and ricin-type beta-trefoil lectin domain. (716 aa)
Celf_3330PFAM: Ricin B lectin; KEGG: ami:Amir_4031 glucan endo-1,3-beta-D-glucosidase; SMART: Ricin B lectin. (539 aa)
Celf_3157KEGG: glycoside hydrolase family 43; PFAM: glycoside hydrolase family 43; Ricin B lectin; SMART: Ricin B lectin. (703 aa)
Celf_0398KEGG: pectate lyase; PFAM: Pectate lyase; Ricin B lectin; SMART: Ricin B lectin. (423 aa)
Celf_0438KEGG: ricin B lectin; PFAM: Ricin B lectin; glycoside hydrolase clan GH-D; SMART: Ricin B lectin. (561 aa)
Celf_1340KEGG: pectate lyase; PFAM: Pectate lyase; Ricin B lectin; SMART: Ricin B lectin. (439 aa)
Celf_2403KEGG: kfl:Kfla_2131 ricin B lectin; PFAM: Ricin B lectin; glycoside hydrolase family 5; SMART: Ricin B lectin; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (475 aa)
Celf_3155Alpha-N-arabinofuranosidase; PFAM: Ricin B lectin; KEGG: scb:SCAB_79241 putative arabinofuranosidase; SMART: Ricin B lectin. (500 aa)
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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