STRINGSTRING
xylA xylA Celf_2108 Celf_2108 Celf_2744 Celf_2744 Celf_3011 Celf_3011 Celf_3296 Celf_3296 Celf_3308 Celf_3308
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
xylAKEGG: xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel; Belongs to the xylose isomerase family. (395 aa)
Celf_2108KEGG: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain-containing protein TIM barrel; SMART: AP endonuclease family 2. (253 aa)
Celf_2744PFAM: Xylose isomerase domain-containing protein TIM barrel; AP endonuclease 2 domain protein; KEGG: bcv:Bcav_1355 xylose isomerase domain protein TIM barrel. (333 aa)
Celf_3011KEGG: ach:Achl_3107 L-rhamnose isomerase; TIGRFAM: L-rhamnose isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel. (389 aa)
Celf_3296PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: xce:Xcel_0895 xylose isomerase domain protein TIM barrel. (335 aa)
Celf_3308KEGG: L-rhamnose isomerase; TIGRFAM: L-rhamnose isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel. (392 aa)
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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