(10 nodes) Limonene and pinene degradation network (Pseudomonas peli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCW61636.1	Enoyl-CoA hydratase/carnithine racemase. (367 aa)
	SCW85249.1	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (270 aa)
	SCW29738.1	enoyl-CoA hydratase. (229 aa)
	SCW29819.1	Short chain enoyl-CoA hydratase. (714 aa)
	SCW29948.1	Acetyl esterase/lipase. (309 aa)
	SCW30845.1	Enoyl-CoA hydratase/carnithine racemase. (263 aa)
	fadB	Short chain enoyl-CoA hydratase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. (715 aa)
	SCW48776.1	Coniferyl-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (480 aa)
	SCW60513.1	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (255 aa)
	SCW81592.1	Short chain enoyl-CoA hydratase. (257 aa)

Your Current Organism:

Pseudomonas peli

NCBI taxonomy Id: 592361
Other names: DSM 17833, LMG 23201, LMG:23201, P. peli, Pseudomonas peli Vanparys et al. 2006, Pseudomonas sp. R-20815, strain R-20805

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCW29738.1	SCW29819.1	SAMN05216370_0226	SAMN05216370_0235	enoyl-CoA hydratase.	Short chain enoyl-CoA hydratase.	0.747
SCW29738.1	SCW30845.1	SAMN05216370_0226	SAMN05216370_0320	enoyl-CoA hydratase.	Enoyl-CoA hydratase/carnithine racemase.	0.718
SCW29738.1	SCW60513.1	SAMN05216370_0226	SAMN05216370_2082	enoyl-CoA hydratase.	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.729
SCW29738.1	SCW61636.1	SAMN05216370_0226	SAMN05216370_2180	enoyl-CoA hydratase.	Enoyl-CoA hydratase/carnithine racemase.	0.662
SCW29738.1	SCW81592.1	SAMN05216370_0226	SAMN05216370_3683	enoyl-CoA hydratase.	Short chain enoyl-CoA hydratase.	0.593
SCW29738.1	SCW85249.1	SAMN05216370_0226	SAMN05216370_4014	enoyl-CoA hydratase.	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.840
SCW29738.1	fadB	SAMN05216370_0226	SAMN05216370_0422	enoyl-CoA hydratase.	Short chain enoyl-CoA hydratase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.	0.781
SCW29819.1	SCW29738.1	SAMN05216370_0235	SAMN05216370_0226	Short chain enoyl-CoA hydratase.	enoyl-CoA hydratase.	0.747
SCW29819.1	SCW30845.1	SAMN05216370_0235	SAMN05216370_0320	Short chain enoyl-CoA hydratase.	Enoyl-CoA hydratase/carnithine racemase.	0.772
SCW29819.1	SCW48776.1	SAMN05216370_0235	SAMN05216370_1566	Short chain enoyl-CoA hydratase.	Coniferyl-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.649
SCW29819.1	SCW60513.1	SAMN05216370_0235	SAMN05216370_2082	Short chain enoyl-CoA hydratase.	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.733
SCW29819.1	SCW61636.1	SAMN05216370_0235	SAMN05216370_2180	Short chain enoyl-CoA hydratase.	Enoyl-CoA hydratase/carnithine racemase.	0.684
SCW29819.1	SCW81592.1	SAMN05216370_0235	SAMN05216370_3683	Short chain enoyl-CoA hydratase.	Short chain enoyl-CoA hydratase.	0.693
SCW29819.1	SCW85249.1	SAMN05216370_0235	SAMN05216370_4014	Short chain enoyl-CoA hydratase.	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.772
SCW29819.1	fadB	SAMN05216370_0235	SAMN05216370_0422	Short chain enoyl-CoA hydratase.	Short chain enoyl-CoA hydratase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.	0.876
SCW30845.1	SCW29738.1	SAMN05216370_0320	SAMN05216370_0226	Enoyl-CoA hydratase/carnithine racemase.	enoyl-CoA hydratase.	0.718
SCW30845.1	SCW29819.1	SAMN05216370_0320	SAMN05216370_0235	Enoyl-CoA hydratase/carnithine racemase.	Short chain enoyl-CoA hydratase.	0.772
SCW30845.1	SCW60513.1	SAMN05216370_0320	SAMN05216370_2082	Enoyl-CoA hydratase/carnithine racemase.	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.622
SCW30845.1	SCW61636.1	SAMN05216370_0320	SAMN05216370_2180	Enoyl-CoA hydratase/carnithine racemase.	Enoyl-CoA hydratase/carnithine racemase.	0.837
SCW30845.1	SCW85249.1	SAMN05216370_0320	SAMN05216370_4014	Enoyl-CoA hydratase/carnithine racemase.	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.644