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rpl34E rpl34E TGAM_0136 TGAM_0136 TGAM_0279 TGAM_0279 flpA flpA TGAM_0464 TGAM_0464 gar1 gar1 rps24E rps24E rnp2 rnp2 pdxS pdxS rpl37AE rpl37AE nop10 nop10 rps17E rps17E rps3AE rps3AE srp19 srp19 TGAM_1186 TGAM_1186 rps19E rps19E TGAM_1285 TGAM_1285 rpl35AE rpl35AE TGAM_1410 TGAM_1410 TGAM_1424 TGAM_1424 rpl44E rpl44E rnp4 rnp4 eif6 eif6 rpl31E rpl31E rpl15E rpl15E rnp3 rnp3 nuc nuc rpl24E rpl24E rpl7AE rpl7AE rpl30E rpl30E srp54 srp54 rps4P rps4P truB truB rps5P rps5P rpl19E rpl19E rpl32E rpl32E rnp1 rnp1 suI1 suI1 rps3P rps3P rps19P rps19P
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpl34ELSU ribosomal protein L34E (rpl34E); Belongs to the eukaryotic ribosomal protein eL34 family. (89 aa)
TGAM_0136Thermonuclease-like protein; 1 probable transmembrane helix predicted by modhmm. (156 aa)
TGAM_0279Ribosome subunit biogenesis protein, putative; Belongs to UPF0113 family. (167 aa)
flpAFibrillarin pre-rRNA splicing protein (flpA); Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. (226 aa)
TGAM_0464pre-mRNA splicing, snoRNA binding protein, NOP5/NOP56 related. (422 aa)
gar1Gar1-like small nucleolar rnp, putative (gar1). (99 aa)
rps24ESSU ribosomal protein S24E (rps24E); Belongs to the eukaryotic ribosomal protein eS24 family. (98 aa)
rnp2Ribonuclease P protein component 2 (rnp2); Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 2 family. (120 aa)
pdxSPyridoxine biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. (335 aa)
rpl37AELSU ribosomal protein L37AE (rpl37AE). (86 aa)
nop10Nucleolar RNA-binding protein, Nop10p family; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA. (59 aa)
rps17ESSU ribosomal protein S17E (rps17E); Belongs to the eukaryotic ribosomal protein eS17 family. (67 aa)
rps3AESSU ribosomal protein S3AE (rps3AE); Belongs to the eukaryotic ribosomal protein eS1 family. (200 aa)
srp19Signal recognition particle, subunit SRP19 (srp19); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP. (109 aa)
TGAM_1186Nucleotide binding protein, putative, containing PIN domain. (167 aa)
rps19ESSU ribosomal protein S19E (rps19E); May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (150 aa)
TGAM_1285Nucleotide binding protein, putative, containing PIN domain. (141 aa)
rpl35AELSU ribosomal protein L35AE (rpl35AE); Belongs to the eukaryotic ribosomal protein eL33 family. (87 aa)
TGAM_1410Serine/threonine protein kinase, RIO-like protein. (310 aa)
TGAM_1424RNA-binding protein, containing KH domain. (234 aa)
rpl44ELSU ribosomal protein L44E (rpl44E); Binds to the 23S rRNA. (94 aa)
rnp4Ribonuclease P protein component 4 (rnp4); Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. (123 aa)
eif6Translation initiation factor 6 (eif6); Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. (228 aa)
rpl31ELSU ribosomal protein L31E (rpl31E); Belongs to the eukaryotic ribosomal protein eL31 family. (90 aa)
rpl15ELSU ribosomal protein L15E (rpl15E); Belongs to the eukaryotic ribosomal protein eL15 family. (194 aa)
rnp3Ribonuclease P protein component 3 (rnp3); Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family. (214 aa)
nucThermonuclease (nuc); 1 probable transmembrane helix predicted by modhmm. (195 aa)
rpl24ELSU ribosomal protein L24E (rpl24E); Binds to the 23S rRNA. (68 aa)
rpl7AELSU ribosomal protein L7AE (rpl7AE); Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. (123 aa)
rpl30ELSU ribosomal protein L30E (rpl30E); Belongs to the eukaryotic ribosomal protein eL30 family. (102 aa)
srp54Signal recognition particle, subunit SRP54 (srp54); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. (448 aa)
rps4PSSU ribosomal protein S4P (rps4P); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (180 aa)
truBCentromere binding protein CBF5/pseudouridine synthase truB-like protein (truB); Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. (334 aa)
rps5PSSU ribosomal protein S5P (rps5P); With S4 and S12 plays an important role in translational accuracy. (234 aa)
rpl19ELSU ribosomal protein L19E (rpl19E); Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (150 aa)
rpl32ELSU ribosomal protein L32E (rpl32E); Belongs to the eukaryotic ribosomal protein eL32 family. (127 aa)
rnp1Ribonuclease P protein component 1 (rnp1); Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 1 family. (89 aa)
suI1Protein translation factor SUI1-like protein (SUI1); Belongs to the SUI1 family. (98 aa)
rps3PSSU ribosomal protein S3P (rps3P); Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (209 aa)
rps19PSSU ribosomal protein S19P (rps19P); Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (133 aa)
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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