STRINGSTRING
FSU_0174 FSU_0174 coaX coaX FSU_0177 FSU_0177 FSU_0178 FSU_0178 FSU_0179 FSU_0179 FSU_0180 FSU_0180 FSU_0181 FSU_0181 FSU_0446 FSU_0446 FSU_0453 FSU_0453 FSU_1186 FSU_1186 FSU_1215 FSU_1215 FSU_1216 FSU_1216 rfbC rfbC rfbB rfbB rfbA rfbA ugd_1 ugd_1 FSU_1408 FSU_1408 FSU_1409 FSU_1409 FSU_1425 FSU_1425 FSU_1427 FSU_1427 FSU_1428 FSU_1428 FSU_1429 FSU_1429 FSU_1430 FSU_1430 FSU_1431 FSU_1431 FSU_1432 FSU_1432 FSU_1433 FSU_1433 FSU_1434 FSU_1434 FSU_1435 FSU_1435 FSU_1436 FSU_1436 FSU_1437 FSU_1437 FSU_1438 FSU_1438 FSU_1439 FSU_1439 FSU_1440 FSU_1440 FSU_1441 FSU_1441 glf glf ugd_2 ugd_2 FSU_1445 FSU_1445 FSU_1446 FSU_1446 ptsI ptsI ptsH ptsH FSU_1860 FSU_1860 FSU_2077 FSU_2077 FSU_2364 FSU_2364 FSU_2491 FSU_2491 rmd rmd FSU_2796 FSU_2796 FSU_2799 FSU_2799 FSU_2801 FSU_2801 FSU_2858 FSU_2858 rfbD rfbD galE galE FSU_3218 FSU_3218 FSU_3219 FSU_3219 FSU_3220 FSU_3220 FSU_3250 FSU_3250
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
FSU_0174Pilin domain protein; Identified by similarity to GB:AAA53563.1; match to protein family HMM PF07963; match to protein family HMM TIGR02532. (263 aa)
coaXPutative transcriptional activator; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis. (266 aa)
FSU_0177Hypothetical protein; Identified by glimmer; putative. (496 aa)
FSU_0178Hypothetical protein; Identified by glimmer; putative. (95 aa)
FSU_0179Capsular polysaccharide biosynthesis protein; Identified by similarity to SP:P39853; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993. (540 aa)
FSU_0180Identified by match to protein family HMM PF00691; match to protein family HMM PF02412. (659 aa)
FSU_0181Putative tyrosine-protein kinase; Identified by similarity to SP:P38134; match to protein family HMM PF02706; match to protein family HMM TIGR01007. (718 aa)
FSU_0446Oxidoreductase domain protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993. (306 aa)
FSU_0453Identified by similarity to PIR:T48866; match to protein family HMM PF00483. (306 aa)
FSU_1186Identified by match to protein family HMM PF01757. (347 aa)
FSU_1215Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family. (459 aa)
FSU_1216Polysaccharide biosynthesis/export protein; Identified by similarity to SP:Q46629; match to protein family HMM PF02563. (374 aa)
rfbCdTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (187 aa)
rfbBdTDP-glucose 4,6-dehydratase; Identified by similarity to SP:P37777; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR01181. (379 aa)
rfbAGlucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (295 aa)
ugd_1UDP-glucose 6-dehydrogenase; Identified by similarity to SP:O54068; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026. (448 aa)
FSU_1408Nucleotide sugar epimerase; Identified by similarity to GB:AAO32665.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993. (364 aa)
FSU_1409N-acetylmannosaminyltransferase; Identified by similarity to SP:P27620; match to protein family HMM PF03808; match to protein family HMM TIGR00696; Belongs to the glycosyltransferase 26 family. (260 aa)
FSU_1425UDP-glucuronate decarboxylase; Identified by similarity to GB:AAM22494.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993. (340 aa)
FSU_1427Glycerophosphoryl diester phosphodiesterase family protein; Identified by match to protein family HMM PF03009. (297 aa)
FSU_1428Conserved hypothetical protein; Identified by similarity to GB:AAP76676.1. (456 aa)
FSU_1429Capsular polysaccharide biosynthesis protein; Identified by similarity to GB:AAK20704.1; match to protein family HMM PF04488. (272 aa)
FSU_1430Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535. (301 aa)
FSU_1431Putative membrane protein. (448 aa)
FSU_1432Putative lipopolysaccharide/O-antigen transporter; Identified by similarity to SP:P37746; match to protein family HMM PF01943; match to protein family HMM PF03023. (485 aa)
FSU_1433Putative licD protein; Identified by similarity to GB:AAL77432.1; match to protein family HMM PF04991. (274 aa)
FSU_1434Conserved hypothetical protein; Identified by similarity to GB:BAB54977.1. (393 aa)
FSU_1435licC domain protein; Identified by similarity to PIR:H98014. (247 aa)
FSU_1436Putative polysaccharide biosynthesis protein; Identified by similarity to SP:P39630; match to protein family HMM PF01073; match to protein family HMM PF01370. (332 aa)
FSU_1437Identified by match to protein family HMM PF00149. (242 aa)
FSU_1438Putative phosphoenolpyruvate decarboxylase; Identified by similarity to SP:O86938; match to protein family HMM PF02775; match to protein family HMM TIGR03297. (375 aa)
FSU_1439Putative phosphoenolpyruvate mutase; Identified by similarity to GB:AAG26465.1; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02320. (436 aa)
FSU_1440Putative polysaccharide biosynthesis protein; Identified by similarity to GB:AAK61900.1. (250 aa)
FSU_1441UDP-N-acetylglucosamine 4-epimerase; Identified by similarity to SP:Q8X7P7; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993. (324 aa)
glfUDP-galactopyranose mutase; Identified by similarity to SP:P37747; match to protein family HMM PF03275; match to protein family HMM TIGR00031. (374 aa)
ugd_2UDP-glucose 6-dehydrogenase; Identified by similarity to SP:O54068; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (456 aa)
FSU_1445Putative membrane protein. (287 aa)
FSU_1446Putative soluble lytic murein transglycosylase; Identified by similarity to SP:P03810; match to protein family HMM PF01464. (767 aa)
ptsIPhosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr). (612 aa)
ptsHPhosphocarrier protein HPr; Identified by similarity to SP:P23537; match to protein family HMM PF00381; match to protein family HMM TIGR01003. (90 aa)
FSU_1860Putative membrane protein. (255 aa)
FSU_2077Putative tyrosine-protein kinase; Identified by similarity to SP:P38134; match to protein family HMM PF02706; match to protein family HMM TIGR01007. (706 aa)
FSU_2364Conserved hypothetical protein; Identified by similarity to PIR:A64502; match to protein family HMM PF07883. (121 aa)
FSU_2491dTDP-4-dehydrorhamnose reductase-like protein; Identified by similarity to SP:P39631; match to protein family HMM PF01370; match to protein family HMM PF04321. (359 aa)
rmdGDP-4-dehydro-6-deoxy-D-mannose reductase; Identified by similarity to GB:AAG35361.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993. (327 aa)
FSU_2796Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025. (390 aa)
FSU_2799Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025. (485 aa)
FSU_2801Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993. (311 aa)
FSU_2858Putative dehydrogenase; Identified by similarity to SP:P77398; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993. (348 aa)
rfbDdTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. (306 aa)
galEUDP-glucose 4-epimerase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01179; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (338 aa)
FSU_3218Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family. (420 aa)
FSU_3219Bacterial sugar transferase; Identified by match to protein family HMM PF02397. (206 aa)
FSU_3220Putative 1-aminocyclopropane-1-carboxylate deaminase; Identified by similarity to GB:BAA92150.1. (314 aa)
FSU_3250Putative polysaccharide biosynthesis protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. (284 aa)
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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