(32 nodes) Mostly uncharacterized, incl. Racemase and epimerase activity, acting on carbohydrates and derivatives, and Glycosyl transferases group 1 network (Fibrobacter succinogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FSU_3230	Acyltransferase family protein. (332 aa)
	FSU_3232	Putative membrane protein. (370 aa)
	FSU_3234	Identified by match to protein family HMM PF03972. (452 aa)
	FSU_3235	Capsule biosynthesis protein CapA domain protein; Identified by similarity to SP:P19579; match to protein family HMM PF09587. (361 aa)
	FSU_3236	Conserved domain protein; Identified by similarity to OMNI:PSPTO2283. (312 aa)
	FSU_3237	Conserved hypothetical protein; Identified by similarity to GB:AAO36720.1. (377 aa)
	FSU_3238	purD domain protein; Identified by similarity to GB:CAA04374.1; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02655. (413 aa)
	FSU_3239	Conserved hypothetical protein; Identified by similarity to PIR:A69229. (299 aa)
	FSU_3240	Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family. (371 aa)
	FSU_3241	Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943; match to protein family HMM PF03023. (480 aa)
	FSU_3242	Glycosyltransferase domain protein; Identified by similarity to GB:AAN05762.1. (620 aa)
	FSU_3243	Conserved hypothetical protein; Identified by similarity to GB:AAO75149.1. (336 aa)
	FSU_3244	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534. (250 aa)
	FSU_3245	Putative O-antigen polymerase; Identified by similarity to GB:AAK64372.1. (359 aa)
	FSU_3246	Conserved domain protein; Identified by similarity to PIR:G84004. (338 aa)
	FSU_3247	Putative capsular polysaccharide biosynthesis glycosyltransferase; Identified by similarity to GB:BAA82284.1; match to protein family HMM PF00535. (318 aa)
	FSU_3248	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534. (333 aa)
	FSU_3249	UDP-N-acetylglucosamine 2-epimerase; Identified by similarity to GB:AAM22597.1; match to protein family HMM PF02350; match to protein family HMM TIGR00236; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. (376 aa)
	FSU_3252	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534. (409 aa)
	FSU_3253	Putative UDP-glucose 4-epimerase; Identified by similarity to SP:Q56623; match to protein family HMM PF01073; match to protein family HMM PF01370. (292 aa)
	FSU_3254	Lipopolysaccharide synthesis sugar transferase; Identified by similarity to GB:AAF18949.1; match to protein family HMM PF02397. (211 aa)
	FSU_3255	Conserved domain protein; Identified by similarity to PIR:A81984. (172 aa)
	FSU_3256	Conserved domain protein; Identified by similarity to GB:BAC91838.1. (101 aa)
	FSU_3261	Sugar epimerase family protein; Identified by similarity to GB:AAC46089.1; match to protein family HMM PF01370; match to protein family HMM PF07993. (401 aa)
	FSU_3262	UDP-N-acetylglucosamine 2-epimerase; Identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. (394 aa)
	FSU_3263	Conserved domain protein; Identified by similarity to GB:AAO10422.1; overlaps another CDS with the same product name. (131 aa)
	FSU_3264	Conserved domain protein; Identified by similarity to GB:AAO10421.1; overlaps another CDS with the same product name. (94 aa)
	FSU_3265	Conserved hypothetical protein; Identified by similarity to GB:CAE15590.1. (191 aa)
	FSU_3266	Hypothetical protein; Identified by glimmer; putative. (163 aa)
	FSU_3267	Hypothetical protein; Identified by glimmer; putative. (71 aa)
	FSU_3268	Conserved hypothetical protein; Identified by similarity to GB:CAE13158.1. (180 aa)
	FSU_3269	Hypothetical protein; Identified by glimmer; putative. (135 aa)

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
FSU_3230	FSU_3232	Acyltransferase family protein.	Putative membrane protein.	0.737
FSU_3230	FSU_3234	Acyltransferase family protein.	Identified by match to protein family HMM PF03972.	0.732
FSU_3230	FSU_3235	Acyltransferase family protein.	Capsule biosynthesis protein CapA domain protein; Identified by similarity to SP:P19579; match to protein family HMM PF09587.	0.552
FSU_3230	FSU_3236	Acyltransferase family protein.	Conserved domain protein; Identified by similarity to OMNI:PSPTO2283.	0.546
FSU_3230	FSU_3249	Acyltransferase family protein.	UDP-N-acetylglucosamine 2-epimerase; Identified by similarity to GB:AAM22597.1; match to protein family HMM PF02350; match to protein family HMM TIGR00236; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.	0.423
FSU_3230	FSU_3261	Acyltransferase family protein.	Sugar epimerase family protein; Identified by similarity to GB:AAC46089.1; match to protein family HMM PF01370; match to protein family HMM PF07993.	0.582
FSU_3232	FSU_3230	Putative membrane protein.	Acyltransferase family protein.	0.737
FSU_3232	FSU_3234	Putative membrane protein.	Identified by match to protein family HMM PF03972.	0.773
FSU_3232	FSU_3235	Putative membrane protein.	Capsule biosynthesis protein CapA domain protein; Identified by similarity to SP:P19579; match to protein family HMM PF09587.	0.572
FSU_3232	FSU_3236	Putative membrane protein.	Conserved domain protein; Identified by similarity to OMNI:PSPTO2283.	0.568
FSU_3234	FSU_3230	Identified by match to protein family HMM PF03972.	Acyltransferase family protein.	0.732
FSU_3234	FSU_3232	Identified by match to protein family HMM PF03972.	Putative membrane protein.	0.773
FSU_3234	FSU_3235	Identified by match to protein family HMM PF03972.	Capsule biosynthesis protein CapA domain protein; Identified by similarity to SP:P19579; match to protein family HMM PF09587.	0.582
FSU_3234	FSU_3236	Identified by match to protein family HMM PF03972.	Conserved domain protein; Identified by similarity to OMNI:PSPTO2283.	0.585
FSU_3234	FSU_3237	Identified by match to protein family HMM PF03972.	Conserved hypothetical protein; Identified by similarity to GB:AAO36720.1.	0.673
FSU_3234	FSU_3238	Identified by match to protein family HMM PF03972.	purD domain protein; Identified by similarity to GB:CAA04374.1; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02655.	0.500
FSU_3234	FSU_3239	Identified by match to protein family HMM PF03972.	Conserved hypothetical protein; Identified by similarity to PIR:A69229.	0.805
FSU_3235	FSU_3230	Capsule biosynthesis protein CapA domain protein; Identified by similarity to SP:P19579; match to protein family HMM PF09587.	Acyltransferase family protein.	0.552
FSU_3235	FSU_3232	Capsule biosynthesis protein CapA domain protein; Identified by similarity to SP:P19579; match to protein family HMM PF09587.	Putative membrane protein.	0.572
FSU_3235	FSU_3234	Capsule biosynthesis protein CapA domain protein; Identified by similarity to SP:P19579; match to protein family HMM PF09587.	Identified by match to protein family HMM PF03972.	0.582