(12 nodes) RmlC-like jelly roll fold network (Fibrobacter succinogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FSU_3261	Sugar epimerase family protein; Identified by similarity to GB:AAC46089.1; match to protein family HMM PF01370; match to protein family HMM PF07993. (401 aa)
	FSU_2960	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027. (296 aa)
	FSU_2364	Conserved hypothetical protein; Identified by similarity to PIR:A64502; match to protein family HMM PF07883. (121 aa)
	FSU_2188	4-carboxymuconolactone decarboxylase domain protein; Identified by match to protein family HMM PF02627. (404 aa)
	FSU_2116	Putative transcriptional regulator; Identified by similarity to SP:P03020; match to protein family HMM PF00027. (236 aa)
	FSU_2050	Conserved domain protein; Identified by match to protein family HMM PF07883. (75 aa)
	FSU_1945	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027. (266 aa)
	rfbC	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (187 aa)
	FSU_1215	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family. (459 aa)
	FSU_1197	Conserved hypothetical protein; Identified by similarity to GB:AAP77747.1; match to protein family HMM PF00027. (222 aa)
	FSU_0560	Conserved hypothetical protein; Identified by similarity to GB:CAE27785.1; match to protein family HMM PF07883. (200 aa)
	FSU_0357	wxcM family protein; Identified by similarity to GB:AAO06351.1; match to protein family HMM PF05523. (142 aa)

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_0357	rfbC	FSU_0357	FSU_1218	wxcM family protein; Identified by similarity to GB:AAO06351.1; match to protein family HMM PF05523.	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	0.902
FSU_1215	FSU_3261	FSU_1215	FSU_3261	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	Sugar epimerase family protein; Identified by similarity to GB:AAC46089.1; match to protein family HMM PF01370; match to protein family HMM PF07993.	0.802
FSU_1215	rfbC	FSU_1215	FSU_1218	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	0.842
FSU_1945	FSU_2116	FSU_1945	FSU_2116	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	Putative transcriptional regulator; Identified by similarity to SP:P03020; match to protein family HMM PF00027.	0.924
FSU_1945	FSU_2960	FSU_1945	FSU_2960	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	0.957
FSU_2116	FSU_1945	FSU_2116	FSU_1945	Putative transcriptional regulator; Identified by similarity to SP:P03020; match to protein family HMM PF00027.	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	0.924
FSU_2116	FSU_2960	FSU_2116	FSU_2960	Putative transcriptional regulator; Identified by similarity to SP:P03020; match to protein family HMM PF00027.	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	0.900
FSU_2960	FSU_1945	FSU_2960	FSU_1945	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	0.957
FSU_2960	FSU_2116	FSU_2960	FSU_2116	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	Putative transcriptional regulator; Identified by similarity to SP:P03020; match to protein family HMM PF00027.	0.900
FSU_3261	FSU_1215	FSU_3261	FSU_1215	Sugar epimerase family protein; Identified by similarity to GB:AAC46089.1; match to protein family HMM PF01370; match to protein family HMM PF07993.	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.802
rfbC	FSU_0357	FSU_1218	FSU_0357	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	wxcM family protein; Identified by similarity to GB:AAO06351.1; match to protein family HMM PF05523.	0.902
rfbC	FSU_1215	FSU_1218	FSU_1215	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.842