STRINGSTRING
AGB01922.1 AGB01922.1 AGB01923.1 AGB01923.1 AGB01924.1 AGB01924.1 AGB01925.1 AGB01925.1 AGB02004.1 AGB02004.1 AGB02005.1 AGB02005.1 AGB02006.1 AGB02006.1 AGB02007.1 AGB02007.1 AGB02487.1 AGB02487.1 AGB02488.1 AGB02488.1 AGB02489.1 AGB02489.1 AGB02491.1 AGB02491.1 AGB02492.1 AGB02492.1 cdhE cdhE cdhD cdhD cdhC cdhC AGB02747.1 AGB02747.1 cdhA cdhA AGB02750.1 AGB02750.1 AGB02751.1 AGB02751.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AGB01922.1PFAM: Fibrillarin-like archaeal protein; TIGRFAM: 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC; manually curated. (505 aa)
AGB01923.1Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase; PFAM: H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase; TIGRFAM: 5,10-methenyltetrahydromethanopterin hydrogenase. (345 aa)
AGB01924.1CO dehydrogenase maturation factor; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain. (276 aa)
AGB01925.1TIGR00300 family protein; PFAM: LOR/SDH bifunctional enzyme conserved region; TIGRFAM: TIGR00300 family protein. (446 aa)
AGB02004.1Putative transcriptional regulator; PFAM: Bacterial regulatory protein, arsR family. (132 aa)
AGB02005.1Hypothetical protein; PFAM: Cupin domain. (130 aa)
AGB02006.1PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit. (359 aa)
AGB02007.1PFAM: 4Fe-4S binding domain. (103 aa)
AGB02487.1PFAM: CO dehydrogenase/acetyl-CoA synthase complex beta subunit; TIGRFAM: CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit. (676 aa)
AGB02488.1PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit; TIGRFAM: CO dehydrogenase/acetyl-CoA synthase, delta subunit. (318 aa)
AGB02489.1PFAM: Putative Fe-S cluster; CO dehydrogenase/acetyl-CoA synthase delta subunit. (445 aa)
AGB02491.1Hypothetical protein. (348 aa)
AGB02492.1CO dehydrogenase maturation factor; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain. (255 aa)
cdhECO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein); Part of a complex that catalyzes the reversible cleavage of acetyl-CoA, allowing autotrophic growth from CO(2). (478 aa)
cdhDCO dehydrogenase/acetyl-CoA synthase, delta subunit; Part of a complex that catalyzes the reversible cleavage of acetyl-CoA, allowing autotrophic growth from CO(2). Probably maintains the overall quaternary structure of the ACDS complex. Belongs to the CdhD family. (418 aa)
cdhCCO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit; Part of a complex that catalyzes the reversible cleavage of acetyl-CoA, allowing autotrophic growth from CO(2). The alpha-epsilon complex generates CO from CO(2), while the beta subunit (this protein) combines the CO with CoA and a methyl group to form acetyl-CoA. The methyl group, which is incorporated into acetyl-CoA, is transferred to the beta subunit by a corrinoid iron-sulfur protein (the gamma-delta complex); Belongs to the CdhC family. (467 aa)
AGB02747.1PFAM: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; TIGRFAM: CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. (179 aa)
cdhACO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit; Part of the ACDS complex that catalyzes the reversible cleavage of acetyl-CoA, allowing autotrophic growth from CO(2). The alpha-epsilon subcomponent functions as a carbon monoxide dehydrogenase. (783 aa)
AGB02750.1CO dehydrogenase maturation factor; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain. (261 aa)
AGB02751.1CO dehydrogenase maturation factor; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain. (273 aa)
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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