22 items (Myotis lucifugus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	STAB2	Stabilin 2. (2550 aa)
	HAPLN3	Hyaluronan and proteoglycan link protein 3. (361 aa)
	HAPLN1	Hyaluronan and proteoglycan link protein 1. (354 aa)
	HMMR	Hyaluronan mediated motility receptor. (716 aa)
	ITIH2	Inter-alpha-trypsin inhibitor heavy chain 2. (944 aa)
	ACAN	Aggrecan. (2101 aa)
	LYVE1	Lymphatic vessel endothelial hyaluronan receptor 1. (323 aa)
	MRVI1	Murine retrovirus integration site 1 homolog. (903 aa)
	IMPG2	Interphotoreceptor matrix proteoglycan 2. (1253 aa)
	ITIH1	Inter-alpha-trypsin inhibitor heavy chain 1. (905 aa)
	G1PF20_MYOLU	Link domain-containing protein. (468 aa)
	HAPLN2	Hyaluronan and proteoglycan link protein 2. (340 aa)
	LAYN	Layilin. (384 aa)
	VCAN	Versican. (3268 aa)
	C1QBP	Complement C1q binding protein. (280 aa)
	SUSD5	Sushi domain containing 5. (626 aa)
	STAB1	Stabilin 1. (2576 aa)
	IMPG1	Interphotoreceptor matrix proteoglycan 1. (794 aa)
	NCAN	Neurocan. (1327 aa)
	HAPLN4	Hyaluronan and proteoglycan link protein 4. (399 aa)
	TNFAIP6	TNF alpha induced protein 6. (277 aa)
	BCAN	Brevican. (878 aa)

Your Current Organism:

Myotis lucifugus

NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACAN	BCAN	ENSMLUP00000003086	ENSMLUP00000018314	Aggrecan.	Brevican.	0.801
ACAN	G1PF20_MYOLU	ENSMLUP00000003086	ENSMLUP00000009141	Aggrecan.	Link domain-containing protein.	0.705
ACAN	HAPLN1	ENSMLUP00000003086	ENSMLUP00000001472	Aggrecan.	Hyaluronan and proteoglycan link protein 1.	0.986
ACAN	NCAN	ENSMLUP00000003086	ENSMLUP00000015826	Aggrecan.	Neurocan.	0.538
ACAN	TNFAIP6	ENSMLUP00000003086	ENSMLUP00000017719	Aggrecan.	TNF alpha induced protein 6.	0.510
ACAN	VCAN	ENSMLUP00000003086	ENSMLUP00000012522	Aggrecan.	Versican.	0.756
BCAN	ACAN	ENSMLUP00000018314	ENSMLUP00000003086	Brevican.	Aggrecan.	0.801
BCAN	G1PF20_MYOLU	ENSMLUP00000018314	ENSMLUP00000009141	Brevican.	Link domain-containing protein.	0.450
BCAN	HAPLN1	ENSMLUP00000018314	ENSMLUP00000001472	Brevican.	Hyaluronan and proteoglycan link protein 1.	0.641
BCAN	HAPLN4	ENSMLUP00000018314	ENSMLUP00000015828	Brevican.	Hyaluronan and proteoglycan link protein 4.	0.431
BCAN	NCAN	ENSMLUP00000018314	ENSMLUP00000015826	Brevican.	Neurocan.	0.777
BCAN	VCAN	ENSMLUP00000018314	ENSMLUP00000012522	Brevican.	Versican.	0.863
G1PF20_MYOLU	ACAN	ENSMLUP00000009141	ENSMLUP00000003086	Link domain-containing protein.	Aggrecan.	0.705
G1PF20_MYOLU	BCAN	ENSMLUP00000009141	ENSMLUP00000018314	Link domain-containing protein.	Brevican.	0.450
G1PF20_MYOLU	HMMR	ENSMLUP00000009141	ENSMLUP00000001538	Link domain-containing protein.	Hyaluronan mediated motility receptor.	0.842
G1PF20_MYOLU	LYVE1	ENSMLUP00000009141	ENSMLUP00000005656	Link domain-containing protein.	Lymphatic vessel endothelial hyaluronan receptor 1.	0.755
G1PF20_MYOLU	MRVI1	ENSMLUP00000009141	ENSMLUP00000005671	Link domain-containing protein.	Murine retrovirus integration site 1 homolog.	0.648
G1PF20_MYOLU	NCAN	ENSMLUP00000009141	ENSMLUP00000015826	Link domain-containing protein.	Neurocan.	0.571
G1PF20_MYOLU	STAB1	ENSMLUP00000009141	ENSMLUP00000014042	Link domain-containing protein.	Stabilin 1.	0.645
G1PF20_MYOLU	STAB2	ENSMLUP00000009141	ENSMLUP00000000317	Link domain-containing protein.	Stabilin 2.	0.757