STRINGSTRING
LOC102424738 LOC102424738 AQR AQR LOC102433142 LOC102433142 PPWD1 PPWD1 G1P5U4_MYOLU G1P5U4_MYOLU BCAS2 BCAS2 ZCCHC8 ZCCHC8 SNW1 SNW1 AMH AMH SF3A2 SF3A2 CWC27 CWC27 CACTIN CACTIN MAGOHB MAGOHB G1P071_MYOLU G1P071_MYOLU SLU7 SLU7 PRPF8 PRPF8 PNN PNN SF3B6 SF3B6 MAGOH MAGOH PPIL1 PPIL1 SF3A1 SF3A1 CWC15 CWC15 RBM44 RBM44 SYF2 SYF2 CDC40 CDC40 SNRPD2 SNRPD2 MTREX MTREX SF3A3 SF3A3 SF3B1 SF3B1 SNRNP40 SNRNP40 HNRNPU HNRNPU C19orf54 C19orf54 DHX8 DHX8 G1QGD3_MYOLU G1QGD3_MYOLU LOC102428804 LOC102428804 LSM3-2 LSM3-2 LOC102437528 LOC102437528 G1QF38_MYOLU G1QF38_MYOLU LOC102434604 LOC102434604 G1QD90_MYOLU G1QD90_MYOLU SNRPD2-5 SNRPD2-5 G1QD57_MYOLU G1QD57_MYOLU G1QD04_MYOLU G1QD04_MYOLU SNRPD2-4 SNRPD2-4 G1QB86_MYOLU G1QB86_MYOLU G1QB79_MYOLU G1QB79_MYOLU LOC102418823 LOC102418823 G1QA74_MYOLU G1QA74_MYOLU G1Q9E9_MYOLU G1Q9E9_MYOLU G1Q9E2_MYOLU G1Q9E2_MYOLU SNRPN SNRPN FRG1 FRG1 G1Q8S1_MYOLU G1Q8S1_MYOLU SNRPD2-3 SNRPD2-3 G1Q7Z0_MYOLU G1Q7Z0_MYOLU G1Q791_MYOLU G1Q791_MYOLU G1Q6Z5_MYOLU G1Q6Z5_MYOLU G1Q6Z4_MYOLU G1Q6Z4_MYOLU SNRPD2-2 SNRPD2-2 LOC102418430 LOC102418430 BTBD19 BTBD19 LOC102430876 LOC102430876 G1Q3Z3_MYOLU G1Q3Z3_MYOLU G1Q3Q2_MYOLU G1Q3Q2_MYOLU G1Q3G9_MYOLU G1Q3G9_MYOLU LOC102432686 LOC102432686 SNRPG SNRPG G1Q215_MYOLU G1Q215_MYOLU LOC102423433 LOC102423433 G1Q015_MYOLU G1Q015_MYOLU G1PZG5_MYOLU G1PZG5_MYOLU G1PZA2_MYOLU G1PZA2_MYOLU LOC102434925 LOC102434925 G1PXW2_MYOLU G1PXW2_MYOLU G1PXW1_MYOLU G1PXW1_MYOLU PRPF19 PRPF19 RBM8A RBM8A SNRPB SNRPB PPIL2 PPIL2 CRNKL1 CRNKL1 EIF4A2 EIF4A2 LOC102424120 LOC102424120 SRRM2 SRRM2 SF3B3 SF3B3 SNRPA1 SNRPA1 DHX38 DHX38 SNRPF SNRPF CWC22 CWC22 LOC102423103 LOC102423103 LOC102421353 LOC102421353 LSM7 LSM7 CDC5L CDC5L WDR83 WDR83 PABPC1 PABPC1 EFTUD2 EFTUD2 GPATCH1 GPATCH1 LOC102432003 LOC102432003 WDR25 WDR25 SF3B2 SF3B2 SART1 SART1 XAB2 XAB2 DDX23 DDX23 SRSF1 SRSF1 BUD31 BUD31 LSM3 LSM3 SNRNP200 SNRNP200 SNRPD3 SNRPD3 LOC102427012 LOC102427012 DDX5 DDX5 DHX35 DHX35 SNRPD1 SNRPD1 RBM22 RBM22 PLRG1 PLRG1 SNRPB2 SNRPB2 TFIP11 TFIP11 HNRNPR HNRNPR ESS2 ESS2 SYNCRIP SYNCRIP DDX41 DDX41 SRRM1 SRRM1
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
LOC102424738Sm domain-containing protein. (106 aa)
AQRRNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing. (1490 aa)
LOC102433142Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
PPWD1Peptidylprolyl isomerase domain and WD repeat containing 1. (646 aa)
G1P5U4_MYOLUProtein kinase domain-containing protein. (1010 aa)
BCAS2Uncharacterized protein. (225 aa)
ZCCHC8Zinc finger CCHC-type containing 8. (710 aa)
SNW1SKIP_SNW domain-containing protein. (536 aa)
AMHAnti-Mullerian hormone. (568 aa)
SF3A2Matrin-type domain-containing protein. (442 aa)
CWC27CWC27 spliceosome associated cyclophilin. (313 aa)
CACTINCactin, spliceosome C complex subunit. (756 aa)
MAGOHBMago homolog B, exon junction complex subunit. (148 aa)
G1P071_MYOLUUncharacterized protein. (418 aa)
SLU7SLU7 homolog, splicing factor. (586 aa)
PRPF8Pre-mRNA processing factor 8. (2338 aa)
PNNPinin, desmosome associated protein. (721 aa)
SF3B6Splicing factor 3b subunit 6. (125 aa)
MAGOHMago homolog, exon junction complex subunit. (148 aa)
PPIL1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
SF3A1Splicing factor 3a subunit 1. (793 aa)
CWC15Uncharacterized protein. (231 aa)
RBM44RNA binding motif protein 44. (1039 aa)
SYF2SYF2 pre-mRNA splicing factor. (244 aa)
CDC40Cell division cycle 40. (578 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (117 aa)
MTREXMtr4 exosome RNA helicase. (1043 aa)
SF3A3Splicing factor 3a subunit 3. (501 aa)
SF3B1Splicing factor 3b subunit 1. (1304 aa)
SNRNP40WD_REPEATS_REGION domain-containing protein. (404 aa)
HNRNPUHeterogeneous nuclear ribonucleoprotein U. (794 aa)
C19orf54Chromosome 19 open reading frame 54. (243 aa)
DHX8Uncharacterized protein. (1239 aa)
G1QGD3_MYOLUUncharacterized protein. (306 aa)
LOC102428804RRM domain-containing protein. (380 aa)
LSM3-2U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
LOC102437528annotation not available (106 aa)
G1QF38_MYOLUUncharacterized protein; Belongs to the DEAD box helicase family. (349 aa)
LOC102434604Sm domain-containing protein. (106 aa)
G1QD90_MYOLUProtein kinase domain-containing protein. (1000 aa)
SNRPD2-5Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (121 aa)
G1QD57_MYOLUSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
G1QD04_MYOLUSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
SNRPD2-4Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (117 aa)
G1QB86_MYOLUSm domain-containing protein. (203 aa)
G1QB79_MYOLUWD_REPEATS_REGION domain-containing protein. (509 aa)
LOC102418823Uncharacterized protein; Belongs to the DEAD box helicase family. (411 aa)
G1QA74_MYOLUUncharacterized protein. (577 aa)
G1Q9E9_MYOLUSm domain-containing protein. (203 aa)
G1Q9E2_MYOLURNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (167 aa)
SNRPNSmall nuclear ribonucleoprotein-associated protein. (244 aa)
FRG1FSHD region gene 1. (257 aa)
G1Q8S1_MYOLUPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (147 aa)
SNRPD2-3Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (117 aa)
G1Q7Z0_MYOLUUncharacterized protein. (819 aa)
G1Q791_MYOLUUncharacterized protein. (1152 aa)
G1Q6Z5_MYOLUSKIP_SNW domain-containing protein. (536 aa)
G1Q6Z4_MYOLURRM domain-containing protein. (327 aa)
SNRPD2-2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (118 aa)
LOC102418430RRM domain-containing protein. (376 aa)
BTBD19BTB domain containing 19. (262 aa)
LOC102430876MI domain-containing protein. (795 aa)
G1Q3Z3_MYOLUUncharacterized protein. (2136 aa)
G1Q3Q2_MYOLUUncharacterized protein. (231 aa)
G1Q3G9_MYOLUWD_REPEATS_REGION domain-containing protein. (358 aa)
LOC102432686Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (626 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
G1Q215_MYOLUSF3A2 domain-containing protein. (360 aa)
LOC102423433RRM domain-containing protein. (391 aa)
G1Q015_MYOLUSm domain-containing protein. (106 aa)
G1PZG5_MYOLUUncharacterized protein. (174 aa)
G1PZA2_MYOLUSKIP_SNW domain-containing protein. (309 aa)
LOC102434925Uncharacterized protein. (125 aa)
G1PXW2_MYOLUSm domain-containing protein. (108 aa)
G1PXW1_MYOLURRM domain-containing protein. (372 aa)
PRPF19Pre-mRNA processing factor 19. (519 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (235 aa)
PPIL2Peptidylprolyl isomerase like 2. (548 aa)
CRNKL1Crooked neck pre-mRNA splicing factor 1. (772 aa)
EIF4A2Eukaryotic translation initiation factor 4A2; Belongs to the DEAD box helicase family. (408 aa)
LOC102424120Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (232 aa)
SRRM2Serine/arginine repetitive matrix 2. (2590 aa)
SF3B3Splicing factor 3b subunit 3. (1216 aa)
SNRPA1Small nuclear ribonucleoprotein polypeptide A. (250 aa)
DHX38DEAH-box helicase 38. (1225 aa)
SNRPFSmall nuclear ribonucleoprotein polypeptide F. (85 aa)
CWC22CWC22 spliceosome associated protein homolog. (839 aa)
LOC102423103RRM domain-containing protein. (391 aa)
LOC102421353Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (160 aa)
LSM7Sm domain-containing protein. (103 aa)
CDC5LCell division cycle 5 like. (803 aa)
WDR83WD repeat domain 83. (315 aa)
PABPC1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
EFTUD2Elongation factor Tu GTP binding domain containing 2. (974 aa)
GPATCH1G-patch domain containing 1. (927 aa)
LOC102432003Uncharacterized protein. (284 aa)
WDR25WD repeat domain 25. (481 aa)
SF3B2Splicing factor 3b subunit 2. (896 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (806 aa)
XAB2Uncharacterized protein. (702 aa)
DDX23Uncharacterized protein. (818 aa)
SRSF1Uncharacterized protein. (248 aa)
BUD31BUD31 homolog. (144 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
SNRNP200Uncharacterized protein. (2139 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
LOC102427012Uncharacterized protein; Belongs to the DEAD box helicase family. (345 aa)
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (671 aa)
DHX35DEAH-box helicase 35. (703 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (129 aa)
RBM22Uncharacterized protein. (420 aa)
PLRG1WD_REPEATS_REGION domain-containing protein. (505 aa)
SNRPB2Small nuclear ribonucleoprotein polypeptide B2. (225 aa)
TFIP11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Intron turnover seems to proceed through reactions in two lariat-intron associated complexes termed Intron Large (IL) and Intron Small (IS). In cooperation with DHX15 seems to mediate the transition of the U2, U5 and U6 snRNP- containing IL complex to the snRNP-free IS complex leading to efficient debranching and turnover of excised introns. May play a role in the differentiation of ameloblasts and odontoblasts or in the forming of the enamel extrac [...] (837 aa)
HNRNPRHeterogeneous nuclear ribonucleoprotein R. (633 aa)
ESS2Ess-2 splicing factor homolog. (482 aa)
SYNCRIPSynaptotagmin binding cytoplasmic RNA interacting protein. (623 aa)
DDX41DEAD-box helicase 41. (622 aa)
SRRM1Serine and arginine repetitive matrix 1. (914 aa)
Your Current Organism:
Myotis lucifugus
NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat
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