(5 nodes) GspF/PilC family, and Sigma-70, region 4 network (Rhodopirellula islandica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KLU03362.1	Transcriptional control; Belongs to the sigma-70 factor family. ECF subfamily. (253 aa)
	KLU03363.1	Putative protein-transmembrane prediction. (205 aa)
	KLU03364.1	Putative protein-putative transmembrane protein. (355 aa)
	KLU03365.1	Type IV fimbrial assembly protein PilC; Overlaps another CDS with the same product name. (362 aa)
	KLU03366.1	Type IV fimbrial assembly protein PilC; Overlaps another CDS with the same product name. (356 aa)

Your Current Organism:

Rhodopirellula islandica

NCBI taxonomy Id: 595434
Other names: DSM 24040, JCM 17612, R. islandica, Rhodopirellula sp. K833, strain K833

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KLU03362.1	KLU03363.1	RISK_004674	RISK_004675	Transcriptional control; Belongs to the sigma-70 factor family. ECF subfamily.	Putative protein-transmembrane prediction.	0.782
KLU03362.1	KLU03364.1	RISK_004674	RISK_004676	Transcriptional control; Belongs to the sigma-70 factor family. ECF subfamily.	Putative protein-putative transmembrane protein.	0.782
KLU03362.1	KLU03365.1	RISK_004674	RISK_004677	Transcriptional control; Belongs to the sigma-70 factor family. ECF subfamily.	Type IV fimbrial assembly protein PilC; Overlaps another CDS with the same product name.	0.782
KLU03362.1	KLU03366.1	RISK_004674	RISK_004678	Transcriptional control; Belongs to the sigma-70 factor family. ECF subfamily.	Type IV fimbrial assembly protein PilC; Overlaps another CDS with the same product name.	0.812
KLU03363.1	KLU03362.1	RISK_004675	RISK_004674	Putative protein-transmembrane prediction.	Transcriptional control; Belongs to the sigma-70 factor family. ECF subfamily.	0.782
KLU03363.1	KLU03364.1	RISK_004675	RISK_004676	Putative protein-transmembrane prediction.	Putative protein-putative transmembrane protein.	0.782
KLU03363.1	KLU03365.1	RISK_004675	RISK_004677	Putative protein-transmembrane prediction.	Type IV fimbrial assembly protein PilC; Overlaps another CDS with the same product name.	0.782
KLU03363.1	KLU03366.1	RISK_004675	RISK_004678	Putative protein-transmembrane prediction.	Type IV fimbrial assembly protein PilC; Overlaps another CDS with the same product name.	0.782
KLU03364.1	KLU03362.1	RISK_004676	RISK_004674	Putative protein-putative transmembrane protein.	Transcriptional control; Belongs to the sigma-70 factor family. ECF subfamily.	0.782
KLU03364.1	KLU03363.1	RISK_004676	RISK_004675	Putative protein-putative transmembrane protein.	Putative protein-transmembrane prediction.	0.782
KLU03364.1	KLU03365.1	RISK_004676	RISK_004677	Putative protein-putative transmembrane protein.	Type IV fimbrial assembly protein PilC; Overlaps another CDS with the same product name.	0.804
KLU03364.1	KLU03366.1	RISK_004676	RISK_004678	Putative protein-putative transmembrane protein.	Type IV fimbrial assembly protein PilC; Overlaps another CDS with the same product name.	0.804
KLU03365.1	KLU03362.1	RISK_004677	RISK_004674	Type IV fimbrial assembly protein PilC; Overlaps another CDS with the same product name.	Transcriptional control; Belongs to the sigma-70 factor family. ECF subfamily.	0.782
KLU03365.1	KLU03363.1	RISK_004677	RISK_004675	Type IV fimbrial assembly protein PilC; Overlaps another CDS with the same product name.	Putative protein-transmembrane prediction.	0.782
KLU03365.1	KLU03364.1	RISK_004677	RISK_004676	Type IV fimbrial assembly protein PilC; Overlaps another CDS with the same product name.	Putative protein-putative transmembrane protein.	0.804
KLU03365.1	KLU03366.1	RISK_004677	RISK_004678	Type IV fimbrial assembly protein PilC; Overlaps another CDS with the same product name.	Type IV fimbrial assembly protein PilC; Overlaps another CDS with the same product name.	0.884
KLU03366.1	KLU03362.1	RISK_004678	RISK_004674	Type IV fimbrial assembly protein PilC; Overlaps another CDS with the same product name.	Transcriptional control; Belongs to the sigma-70 factor family. ECF subfamily.	0.812
KLU03366.1	KLU03363.1	RISK_004678	RISK_004675	Type IV fimbrial assembly protein PilC; Overlaps another CDS with the same product name.	Putative protein-transmembrane prediction.	0.782
KLU03366.1	KLU03364.1	RISK_004678	RISK_004676	Type IV fimbrial assembly protein PilC; Overlaps another CDS with the same product name.	Putative protein-putative transmembrane protein.	0.804
KLU03366.1	KLU03365.1	RISK_004678	RISK_004677	Type IV fimbrial assembly protein PilC; Overlaps another CDS with the same product name.	Type IV fimbrial assembly protein PilC; Overlaps another CDS with the same product name.	0.884