Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ackA | pta | SMDSEM_113 | SMDSEM_112 | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | Phosphate acetyltransferase; Predicted based on similarity to TIGRFAM pta and related proteins in nr. | 0.999 |
| ackA | sucC | SMDSEM_113 | SMDSEM_084 | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | succinyl-CoA synthetase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.681 |
| ackA | sucD | SMDSEM_113 | SMDSEM_161 | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.662 |
| lpdA | lpdA-2 | SMDSEM_108 | SMDSEM_186 | Dihydrolipoamide dehydrogenase; Predicted based on similarity to protein in genome with GenBank Accession Number CP000770. | Dihydrolipoamide dehydrogenase; Predicted based on similarity to protein in genome with GenBank Accession Number CP000770. | 0.833 |
| lpdA | pta | SMDSEM_108 | SMDSEM_112 | Dihydrolipoamide dehydrogenase; Predicted based on similarity to protein in genome with GenBank Accession Number CP000770. | Phosphate acetyltransferase; Predicted based on similarity to TIGRFAM pta and related proteins in nr. | 0.634 |
| lpdA-2 | lpdA | SMDSEM_186 | SMDSEM_108 | Dihydrolipoamide dehydrogenase; Predicted based on similarity to protein in genome with GenBank Accession Number CP000770. | Dihydrolipoamide dehydrogenase; Predicted based on similarity to protein in genome with GenBank Accession Number CP000770. | 0.833 |
| lpdA-2 | pta | SMDSEM_186 | SMDSEM_112 | Dihydrolipoamide dehydrogenase; Predicted based on similarity to protein in genome with GenBank Accession Number CP000770. | Phosphate acetyltransferase; Predicted based on similarity to TIGRFAM pta and related proteins in nr. | 0.634 |
| pta | ackA | SMDSEM_112 | SMDSEM_113 | Phosphate acetyltransferase; Predicted based on similarity to TIGRFAM pta and related proteins in nr. | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | 0.999 |
| pta | lpdA | SMDSEM_112 | SMDSEM_108 | Phosphate acetyltransferase; Predicted based on similarity to TIGRFAM pta and related proteins in nr. | Dihydrolipoamide dehydrogenase; Predicted based on similarity to protein in genome with GenBank Accession Number CP000770. | 0.634 |
| pta | lpdA-2 | SMDSEM_112 | SMDSEM_186 | Phosphate acetyltransferase; Predicted based on similarity to TIGRFAM pta and related proteins in nr. | Dihydrolipoamide dehydrogenase; Predicted based on similarity to protein in genome with GenBank Accession Number CP000770. | 0.634 |
| pta | sucC | SMDSEM_112 | SMDSEM_084 | Phosphate acetyltransferase; Predicted based on similarity to TIGRFAM pta and related proteins in nr. | succinyl-CoA synthetase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.922 |
| pta | sucD | SMDSEM_112 | SMDSEM_161 | Phosphate acetyltransferase; Predicted based on similarity to TIGRFAM pta and related proteins in nr. | succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.925 |
| sucC | ackA | SMDSEM_084 | SMDSEM_113 | succinyl-CoA synthetase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | 0.681 |
| sucC | pta | SMDSEM_084 | SMDSEM_112 | succinyl-CoA synthetase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | Phosphate acetyltransferase; Predicted based on similarity to TIGRFAM pta and related proteins in nr. | 0.922 |
| sucC | sucD | SMDSEM_084 | SMDSEM_161 | succinyl-CoA synthetase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.999 |
| sucD | ackA | SMDSEM_161 | SMDSEM_113 | succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | 0.662 |
| sucD | pta | SMDSEM_161 | SMDSEM_112 | succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | Phosphate acetyltransferase; Predicted based on similarity to TIGRFAM pta and related proteins in nr. | 0.925 |
| sucD | sucC | SMDSEM_161 | SMDSEM_084 | succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | succinyl-CoA synthetase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.999 |