7 items (Capsaspora owczarzaki) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAOG_005478	Tnf receptor-associated factor 7. (830 aa)
	CAOG_007531	Uncharacterized protein. (548 aa)
	CAOG_001293	Ubiquitin family protein. (802 aa)
	CAOG_008578	UBIQUITIN_CONJUGAT_2 domain-containing protein. (1216 aa)
	CAOG_003184	Ubiquitin-carboxyl extension. (100 aa)
	CAOG_003260	Ubiquitin/60S ribosomal protein L40 fusion. (128 aa)
	CAOG_005933	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (136 aa)

Your Current Organism:

Capsaspora owczarzaki

NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAOG_001293	CAOG_003184	A0A0D2WK21	A0A0D2WMP7	Ubiquitin family protein.	Ubiquitin-carboxyl extension.	0.830
CAOG_001293	CAOG_003260	A0A0D2WK21	A0A0D2WMT4	Ubiquitin family protein.	Ubiquitin/60S ribosomal protein L40 fusion.	0.835
CAOG_001293	CAOG_005478	A0A0D2WK21	A0A0D2VU97	Ubiquitin family protein.	Tnf receptor-associated factor 7.	0.973
CAOG_001293	CAOG_005933	A0A0D2WK21	A0A0D2X458	Ubiquitin family protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.837
CAOG_001293	CAOG_007531	A0A0D2WK21	A0A0D2VZ47	Ubiquitin family protein.	Uncharacterized protein.	0.870
CAOG_001293	CAOG_008578	A0A0D2WK21	A0A0D2WKL8	Ubiquitin family protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.984
CAOG_003184	CAOG_001293	A0A0D2WMP7	A0A0D2WK21	Ubiquitin-carboxyl extension.	Ubiquitin family protein.	0.830
CAOG_003184	CAOG_003260	A0A0D2WMP7	A0A0D2WMT4	Ubiquitin-carboxyl extension.	Ubiquitin/60S ribosomal protein L40 fusion.	0.939
CAOG_003184	CAOG_005478	A0A0D2WMP7	A0A0D2VU97	Ubiquitin-carboxyl extension.	Tnf receptor-associated factor 7.	0.950
CAOG_003184	CAOG_005933	A0A0D2WMP7	A0A0D2X458	Ubiquitin-carboxyl extension.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.939
CAOG_003184	CAOG_007531	A0A0D2WMP7	A0A0D2VZ47	Ubiquitin-carboxyl extension.	Uncharacterized protein.	0.984
CAOG_003184	CAOG_008578	A0A0D2WMP7	A0A0D2WKL8	Ubiquitin-carboxyl extension.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.982
CAOG_003260	CAOG_001293	A0A0D2WMT4	A0A0D2WK21	Ubiquitin/60S ribosomal protein L40 fusion.	Ubiquitin family protein.	0.835
CAOG_003260	CAOG_003184	A0A0D2WMT4	A0A0D2WMP7	Ubiquitin/60S ribosomal protein L40 fusion.	Ubiquitin-carboxyl extension.	0.939
CAOG_003260	CAOG_005478	A0A0D2WMT4	A0A0D2VU97	Ubiquitin/60S ribosomal protein L40 fusion.	Tnf receptor-associated factor 7.	0.996
CAOG_003260	CAOG_007531	A0A0D2WMT4	A0A0D2VZ47	Ubiquitin/60S ribosomal protein L40 fusion.	Uncharacterized protein.	0.972
CAOG_003260	CAOG_008578	A0A0D2WMT4	A0A0D2WKL8	Ubiquitin/60S ribosomal protein L40 fusion.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.987
CAOG_005478	CAOG_001293	A0A0D2VU97	A0A0D2WK21	Tnf receptor-associated factor 7.	Ubiquitin family protein.	0.973
CAOG_005478	CAOG_003184	A0A0D2VU97	A0A0D2WMP7	Tnf receptor-associated factor 7.	Ubiquitin-carboxyl extension.	0.950
CAOG_005478	CAOG_003260	A0A0D2VU97	A0A0D2WMT4	Tnf receptor-associated factor 7.	Ubiquitin/60S ribosomal protein L40 fusion.	0.996