6 items (Capsaspora owczarzaki) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAOG_004581	Ras family protein. (191 aa)
	CAOG_004963	Uncharacterized protein. (617 aa)
	CAOG_001013	Uncharacterized protein. (1625 aa)
	CAOG_004590	Abnormal cell MIGration family member. (224 aa)
	CAOG_006698	Uncharacterized protein. (247 aa)
	CAOG_008047	Rho GDP dissociation inhibitor. (186 aa)

Your Current Organism:

Capsaspora owczarzaki

NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAOG_001013	CAOG_004581	A0A0D2WIC4	A0A0D2UFF5	Uncharacterized protein.	Ras family protein.	0.787
CAOG_001013	CAOG_004590	A0A0D2WIC4	A0A0D2WRI9	Uncharacterized protein.	Abnormal cell MIGration family member.	0.882
CAOG_001013	CAOG_004963	A0A0D2WIC4	A0A0D2VSY1	Uncharacterized protein.	Uncharacterized protein.	0.661
CAOG_001013	CAOG_006698	A0A0D2WIC4	A0A0D2WUI3	Uncharacterized protein.	Uncharacterized protein.	0.594
CAOG_004581	CAOG_001013	A0A0D2UFF5	A0A0D2WIC4	Ras family protein.	Uncharacterized protein.	0.787
CAOG_004581	CAOG_004590	A0A0D2UFF5	A0A0D2WRI9	Ras family protein.	Abnormal cell MIGration family member.	0.798
CAOG_004581	CAOG_004963	A0A0D2UFF5	A0A0D2VSY1	Ras family protein.	Uncharacterized protein.	0.989
CAOG_004581	CAOG_006698	A0A0D2UFF5	A0A0D2WUI3	Ras family protein.	Uncharacterized protein.	0.545
CAOG_004581	CAOG_008047	A0A0D2UFF5	A0A0D2WYH1	Ras family protein.	Rho GDP dissociation inhibitor.	0.881
CAOG_004590	CAOG_001013	A0A0D2WRI9	A0A0D2WIC4	Abnormal cell MIGration family member.	Uncharacterized protein.	0.882
CAOG_004590	CAOG_004581	A0A0D2WRI9	A0A0D2UFF5	Abnormal cell MIGration family member.	Ras family protein.	0.798
CAOG_004590	CAOG_004963	A0A0D2WRI9	A0A0D2VSY1	Abnormal cell MIGration family member.	Uncharacterized protein.	0.989
CAOG_004590	CAOG_006698	A0A0D2WRI9	A0A0D2WUI3	Abnormal cell MIGration family member.	Uncharacterized protein.	0.695
CAOG_004590	CAOG_008047	A0A0D2WRI9	A0A0D2WYH1	Abnormal cell MIGration family member.	Rho GDP dissociation inhibitor.	0.946
CAOG_004963	CAOG_001013	A0A0D2VSY1	A0A0D2WIC4	Uncharacterized protein.	Uncharacterized protein.	0.661
CAOG_004963	CAOG_004581	A0A0D2VSY1	A0A0D2UFF5	Uncharacterized protein.	Ras family protein.	0.989
CAOG_004963	CAOG_004590	A0A0D2VSY1	A0A0D2WRI9	Uncharacterized protein.	Abnormal cell MIGration family member.	0.989
CAOG_004963	CAOG_006698	A0A0D2VSY1	A0A0D2WUI3	Uncharacterized protein.	Uncharacterized protein.	0.828
CAOG_006698	CAOG_001013	A0A0D2WUI3	A0A0D2WIC4	Uncharacterized protein.	Uncharacterized protein.	0.594
CAOG_006698	CAOG_004581	A0A0D2WUI3	A0A0D2UFF5	Uncharacterized protein.	Ras family protein.	0.545