6 items (Capsaspora owczarzaki) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAOG_003488	CMGC/SRPK protein kinase. (547 aa)
	CAOG_000458	Small nuclear RNA auxiliary factor 1. (188 aa)
	CAOG_003309	Uncharacterized protein. (239 aa)
	CAOG_004274	Uncharacterized protein. (200 aa)
	CAOG_009862	Uncharacterized protein. (751 aa)
	CAOG_007948	Uncharacterized protein. (157 aa)

Your Current Organism:

Capsaspora owczarzaki

NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAOG_000458	CAOG_003309	A0A0D2WH57	A0A0D2WP16	Small nuclear RNA auxiliary factor 1.	Uncharacterized protein.	0.876
CAOG_000458	CAOG_003488	A0A0D2WH57	A0A0D2VPU2	Small nuclear RNA auxiliary factor 1.	CMGC/SRPK protein kinase.	0.521
CAOG_000458	CAOG_004274	A0A0D2WH57	A0A0D2WQX2	Small nuclear RNA auxiliary factor 1.	Uncharacterized protein.	0.873
CAOG_000458	CAOG_007948	A0A0D2WH57	A0A0D2X5I5	Small nuclear RNA auxiliary factor 1.	Uncharacterized protein.	0.861
CAOG_000458	CAOG_009862	A0A0D2WH57	A0A0D2WTG7	Small nuclear RNA auxiliary factor 1.	Uncharacterized protein.	0.998
CAOG_003309	CAOG_000458	A0A0D2WP16	A0A0D2WH57	Uncharacterized protein.	Small nuclear RNA auxiliary factor 1.	0.876
CAOG_003309	CAOG_003488	A0A0D2WP16	A0A0D2VPU2	Uncharacterized protein.	CMGC/SRPK protein kinase.	0.985
CAOG_003309	CAOG_004274	A0A0D2WP16	A0A0D2WQX2	Uncharacterized protein.	Uncharacterized protein.	0.929
CAOG_003309	CAOG_007948	A0A0D2WP16	A0A0D2X5I5	Uncharacterized protein.	Uncharacterized protein.	0.897
CAOG_003309	CAOG_009862	A0A0D2WP16	A0A0D2WTG7	Uncharacterized protein.	Uncharacterized protein.	0.974
CAOG_003488	CAOG_000458	A0A0D2VPU2	A0A0D2WH57	CMGC/SRPK protein kinase.	Small nuclear RNA auxiliary factor 1.	0.521
CAOG_003488	CAOG_003309	A0A0D2VPU2	A0A0D2WP16	CMGC/SRPK protein kinase.	Uncharacterized protein.	0.985
CAOG_003488	CAOG_004274	A0A0D2VPU2	A0A0D2WQX2	CMGC/SRPK protein kinase.	Uncharacterized protein.	0.826
CAOG_003488	CAOG_007948	A0A0D2VPU2	A0A0D2X5I5	CMGC/SRPK protein kinase.	Uncharacterized protein.	0.845
CAOG_003488	CAOG_009862	A0A0D2VPU2	A0A0D2WTG7	CMGC/SRPK protein kinase.	Uncharacterized protein.	0.907
CAOG_004274	CAOG_000458	A0A0D2WQX2	A0A0D2WH57	Uncharacterized protein.	Small nuclear RNA auxiliary factor 1.	0.873
CAOG_004274	CAOG_003309	A0A0D2WQX2	A0A0D2WP16	Uncharacterized protein.	Uncharacterized protein.	0.929
CAOG_004274	CAOG_003488	A0A0D2WQX2	A0A0D2VPU2	Uncharacterized protein.	CMGC/SRPK protein kinase.	0.826
CAOG_004274	CAOG_007948	A0A0D2WQX2	A0A0D2X5I5	Uncharacterized protein.	Uncharacterized protein.	0.976
CAOG_004274	CAOG_009862	A0A0D2WQX2	A0A0D2WTG7	Uncharacterized protein.	Uncharacterized protein.	0.941