27 items (Capsaspora owczarzaki) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAOG_002237	SET domain-containing protein. (1632 aa)
	CAOG_000754	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	CAOG_003954	Uncharacterized protein. (556 aa)
	CAOG_004380	Uncharacterized protein. (500 aa)
	CAOG_000472	Uncharacterized protein. (378 aa)
	CAOG_001403	SET domain-containing protein. (479 aa)
	CAOG_008663	Uncharacterized protein. (500 aa)
	CAOG_003426	Uncharacterized protein. (544 aa)
	CAOG_006333	Uncharacterized protein. (423 aa)
	CAOG_000643	SET domain-containing protein. (1188 aa)
	CAOG_008491	Uncharacterized protein. (1444 aa)
	CAOG_001525	Ash2-like protein. (818 aa)
	CAOG_008575	Rubis-subs-bind domain-containing protein. (533 aa)
	CAOG_002695	Uncharacterized protein. (143 aa)
	CAOG_002820	Uncharacterized protein. (379 aa)
	CAOG_003580	Setd1a protein. (1312 aa)
	CAOG_004342	Uncharacterized protein. (1320 aa)
	CAOG_004372	Histone H3-K4 methyltransferase. (519 aa)
	CAOG_003906	Uncharacterized protein. (890 aa)
	CAOG_005107	Uncharacterized protein. (950 aa)
	CAOG_005365	ANK_REP_REGION domain-containing protein. (219 aa)
	CAOG_007681	SET domain-containing protein. (377 aa)
	CAOG_007464	SMYD5 protein. (469 aa)
	CAOG_000526	SET domain-containing protein. (176 aa)
	CAOG_001362	Mixed-lineage leukemia protein. (1884 aa)
	CAOG_002948	SET domain-containing protein. (980 aa)
	CAOG_005002	Uncharacterized protein. (640 aa)

Your Current Organism:

Capsaspora owczarzaki

NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAOG_000526	CAOG_000754	A0A0D2X0F3	A0A0D2U7V4	SET domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.832
CAOG_000526	CAOG_001362	A0A0D2X0F3	A0A0D2X105	SET domain-containing protein.	Mixed-lineage leukemia protein.	0.548
CAOG_000526	CAOG_001525	A0A0D2X0F3	A0A0D2WJG6	SET domain-containing protein.	Ash2-like protein.	0.771
CAOG_000526	CAOG_002237	A0A0D2X0F3	A0A0D2U7D3	SET domain-containing protein.	SET domain-containing protein.	0.609
CAOG_000526	CAOG_002695	A0A0D2X0F3	A0A0D2WLS1	SET domain-containing protein.	Uncharacterized protein.	0.581
CAOG_000526	CAOG_002948	A0A0D2X0F3	A0A0D2X238	SET domain-containing protein.	SET domain-containing protein.	0.763
CAOG_000526	CAOG_003426	A0A0D2X0F3	A0A0D2VPL7	SET domain-containing protein.	Uncharacterized protein.	0.829
CAOG_000526	CAOG_003580	A0A0D2X0F3	A0A0D2WPP1	SET domain-containing protein.	Setd1a protein.	0.795
CAOG_000526	CAOG_003906	A0A0D2X0F3	A0A0D2WQA1	SET domain-containing protein.	Uncharacterized protein.	0.795
CAOG_000526	CAOG_004342	A0A0D2X0F3	A0A0D2WPY6	SET domain-containing protein.	Uncharacterized protein.	0.658
CAOG_000526	CAOG_004372	A0A0D2X0F3	A0A0D2WQ11	SET domain-containing protein.	Histone H3-K4 methyltransferase.	0.825
CAOG_000526	CAOG_005365	A0A0D2X0F3	A0A0D2WT64	SET domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.615
CAOG_000526	CAOG_006333	A0A0D2X0F3	A0A0D2VWJ0	SET domain-containing protein.	Uncharacterized protein.	0.615
CAOG_000526	CAOG_007681	A0A0D2X0F3	A0A0D2WWA0	SET domain-containing protein.	SET domain-containing protein.	0.755
CAOG_000526	CAOG_008491	A0A0D2X0F3	A0A0D2WIU0	SET domain-containing protein.	Uncharacterized protein.	0.658
CAOG_000643	CAOG_003580	A0A0D2WHK0	A0A0D2WPP1	SET domain-containing protein.	Setd1a protein.	0.494
CAOG_000754	CAOG_000526	A0A0D2U7V4	A0A0D2X0F3	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	SET domain-containing protein.	0.832
CAOG_000754	CAOG_001362	A0A0D2U7V4	A0A0D2X105	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Mixed-lineage leukemia protein.	0.777
CAOG_000754	CAOG_001403	A0A0D2U7V4	A0A0D2VJ72	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	SET domain-containing protein.	0.788
CAOG_000754	CAOG_001525	A0A0D2U7V4	A0A0D2WJG6	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Ash2-like protein.	0.947