46 items (Capsaspora owczarzaki) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAOG_003500	RRM domain-containing protein. (374 aa)
	CAOG_002667	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (413 aa)
	CAOG_000323	Suf domain-containing protein. (787 aa)
	CAOG_000235	WD_REPEATS_REGION domain-containing protein. (757 aa)
	CAOG_007785	Cleavage stimulation factor. (432 aa)
	CAOG_008076	Uncharacterized protein. (1228 aa)
	CAOG_007182	RRM domain-containing protein. (535 aa)
	CAOG_001454	Uncharacterized protein. (333 aa)
	CAOG_002531	Transducin family protein/WD-40 repeat family protein. (316 aa)
	CAOG_003309	Uncharacterized protein. (239 aa)
	CAOG_004406	Pre-mRNA splicing factor prp17. (664 aa)
	CAOG_004100	Uncharacterized protein. (162 aa)
	CAOG_007569	Thoc2 protein. (1756 aa)
	CAOG_007948	Uncharacterized protein. (157 aa)
	CAOG_001435	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (198 aa)
	CAOG_000659	CID domain-containing protein. (603 aa)
	CAOG_000748	CPSF3 protein. (788 aa)
	CAOG_000458	Small nuclear RNA auxiliary factor 1. (188 aa)
	CAOG_000431	RRM domain-containing protein. (312 aa)
	CAOG_000124	Uncharacterized protein. (785 aa)
	CAOG_008074	MJ1316 domain-containing protein. (237 aa)
	CAOG_008022	Small nuclear ribonucleoprotein Sm D3. (135 aa)
	CAOG_007919	Sm domain-containing protein. (85 aa)
	CAOG_007016	RNA binding domain-containing protein. (135 aa)
	CAOG_004728	Mago nashi protein. (202 aa)
	CAOG_001837	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily. (435 aa)
	CAOG_008534	Uncharacterized protein. (790 aa)
	CAOG_008518	Uncharacterized protein. (987 aa)
	CAOG_001296	SLBP_RNA_bind domain-containing protein. (327 aa)
	CAOG_001153	Cleavage and polyadenylation specificity factor subunit 2. (838 aa)
	CAOG_008094	Fip1 domain-containing protein. (377 aa)
	CAOG_007112	MIF4G domain-containing protein. (969 aa)
	CAOG_006930	Nuclear cap binding protein subunit 2. (359 aa)
	CAOG_004089	Cleavage and polyadenylation specificity factor 1. (1668 aa)
	CAOG_003590	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (87 aa)
	CAOG_003505	RNP domain-containing protein. (224 aa)
	CAOG_003103	SAP domain-containing protein. (244 aa)
	CAOG_002696	Uncharacterized protein. (1118 aa)
	CAOG_002659	PWI domain-containing protein. (331 aa)
	CAOG_000891	Uncharacterized protein. (304 aa)
	CAOG_000014	Nuclear RNA helicase. (433 aa)
	CAOG_004260	Step II splicing factor SLU7. (529 aa)
	CAOG_007058	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (639 aa)
	CAOG_006779	Small nuclear ribonucleoprotein G. (77 aa)
	CAOG_009862	Uncharacterized protein. (751 aa)
	CAOG_004274	Uncharacterized protein. (200 aa)

Your Current Organism:

Capsaspora owczarzaki

NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAOG_000014	CAOG_000124	A0A0D2TZH7	A0A0D2WGD5	Nuclear RNA helicase.	Uncharacterized protein.	0.967
CAOG_000014	CAOG_000323	A0A0D2TZH7	A0A0D2X0A7	Nuclear RNA helicase.	Suf domain-containing protein.	0.733
CAOG_000014	CAOG_000431	A0A0D2TZH7	A0A0D2WH37	Nuclear RNA helicase.	RRM domain-containing protein.	0.645
CAOG_000014	CAOG_000458	A0A0D2TZH7	A0A0D2WH57	Nuclear RNA helicase.	Small nuclear RNA auxiliary factor 1.	0.633
CAOG_000014	CAOG_000659	A0A0D2TZH7	A0A0D2WIZ0	Nuclear RNA helicase.	CID domain-containing protein.	0.799
CAOG_000014	CAOG_001435	A0A0D2TZH7	A0A0D2WJ88	Nuclear RNA helicase.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.681
CAOG_000014	CAOG_001454	A0A0D2TZH7	A0A0D2WKJ6	Nuclear RNA helicase.	Uncharacterized protein.	0.948
CAOG_000014	CAOG_001837	A0A0D2TZH7	A0A0D2VKI7	Nuclear RNA helicase.	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.	0.609
CAOG_000014	CAOG_002531	A0A0D2TZH7	A0A0D2WLF0	Nuclear RNA helicase.	Transducin family protein/WD-40 repeat family protein.	0.913
CAOG_000014	CAOG_002659	A0A0D2TZH7	A0A0D2U8Y8	Nuclear RNA helicase.	PWI domain-containing protein.	0.851
CAOG_000014	CAOG_002667	A0A0D2TZH7	A0A0D2X1W9	Nuclear RNA helicase.	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.	0.971
CAOG_000014	CAOG_003103	A0A0D2TZH7	A0A0D2UAM4	Nuclear RNA helicase.	SAP domain-containing protein.	0.974
CAOG_000014	CAOG_003309	A0A0D2TZH7	A0A0D2WP16	Nuclear RNA helicase.	Uncharacterized protein.	0.733
CAOG_000014	CAOG_003500	A0A0D2TZH7	A0A0D2X2H2	Nuclear RNA helicase.	RRM domain-containing protein.	0.555
CAOG_000014	CAOG_003505	A0A0D2TZH7	A0A0D2UC17	Nuclear RNA helicase.	RNP domain-containing protein.	0.800
CAOG_000014	CAOG_003590	A0A0D2TZH7	A0A0D2UCD9	Nuclear RNA helicase.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.736
CAOG_000014	CAOG_004100	A0A0D2TZH7	A0A0D2WQM9	Nuclear RNA helicase.	Uncharacterized protein.	0.646
CAOG_000014	CAOG_004260	A0A0D2TZH7	A0A0D2WQW1	Nuclear RNA helicase.	Step II splicing factor SLU7.	0.922
CAOG_000014	CAOG_004274	A0A0D2TZH7	A0A0D2WQX2	Nuclear RNA helicase.	Uncharacterized protein.	0.764
CAOG_000014	CAOG_004406	A0A0D2TZH7	A0A0D2WQ23	Nuclear RNA helicase.	Pre-mRNA splicing factor prp17.	0.916