32 items (Capsaspora owczarzaki) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAOG_006941	Uncharacterized protein. (250 aa)
	CAOG_006651	SHS2_Rpb7-N domain-containing protein. (272 aa)
	CAOG_006656	Tbpl2 protein. (208 aa)
	CAOG_007941	Polymerase I polypeptide C. (414 aa)
	CAOG_008298	DNA repair helicase RAD25. (818 aa)
	CAOG_008527	Helicase ATP-binding domain-containing protein. (771 aa)
	CAOG_001357	General transcription factor IIH subunit. (427 aa)
	CAOG_008052	Ercc6 protein. (1576 aa)
	CAOG_007802	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1126 aa)
	CAOG_008178	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	CAOG_006159	Transcription factor IIH subunit. (959 aa)
	CAOG_004688	RRN7-type domain-containing protein. (553 aa)
	CAOG_003182	DNA-directed RNA polymerase 2. (211 aa)
	CAOG_002676	SPRT-like metalloprotease. (739 aa)
	CAOG_002231	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (410 aa)
	CAOG_002212	BSD domain-containing protein. (693 aa)
	CAOG_002396	General transcription factor IIH. (381 aa)
	CAOG_001426	Uncharacterized protein. (563 aa)
	CAOG_005320	Uncharacterized protein. (1387 aa)
	CAOG_004925	RNA polymerase II core subunit. (139 aa)
	CAOG_004347	Uncharacterized protein. (290 aa)
	CAOG_001818	Histone H2B; Belongs to the histone H2B family. (127 aa)
	CAOG_001272	DNA-directed RNA polymerase I. (70 aa)
	CAOG_000654	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1900 aa)
	CAOG_003578	Uncharacterized protein. (942 aa)
	CAOG_006332	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (145 aa)
	CAOG_004743	MAT1 domain-containing protein. (213 aa)
	CAOG_003711	Myb-like domain-containing protein. (1033 aa)
	CAOG_000754	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	CAOG_002220	SNF2 family DNA-dependent ATPase. (2352 aa)
	CAOG_000674	Uncharacterized protein. (432 aa)
	CAOG_000504	Uncharacterized protein. (55 aa)

Your Current Organism:

Capsaspora owczarzaki

NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAOG_000504	CAOG_000654	A0A0D2U134	A0A0D2VGW4	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
CAOG_000504	CAOG_000674	A0A0D2U134	A0A0D2U1T8	Uncharacterized protein.	Uncharacterized protein.	0.994
CAOG_000504	CAOG_000754	A0A0D2U134	A0A0D2U7V4	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.943
CAOG_000504	CAOG_001272	A0A0D2U134	A0A0D2VIN6	Uncharacterized protein.	DNA-directed RNA polymerase I.	0.999
CAOG_000504	CAOG_001357	A0A0D2U134	A0A0D2X104	Uncharacterized protein.	General transcription factor IIH subunit.	0.967
CAOG_000504	CAOG_001818	A0A0D2U134	A0A0D2VM00	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.913
CAOG_000504	CAOG_002212	A0A0D2U134	A0A0D2WLW2	Uncharacterized protein.	BSD domain-containing protein.	0.964
CAOG_000504	CAOG_002220	A0A0D2U134	A0A0D2U7A4	Uncharacterized protein.	SNF2 family DNA-dependent ATPase.	0.645
CAOG_000504	CAOG_002231	A0A0D2U134	A0A0D2WLY0	Uncharacterized protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.965
CAOG_000504	CAOG_002396	A0A0D2U134	A0A0D2WL60	Uncharacterized protein.	General transcription factor IIH.	0.968
CAOG_000504	CAOG_003182	A0A0D2U134	A0A0D2WNW1	Uncharacterized protein.	DNA-directed RNA polymerase 2.	0.998
CAOG_000504	CAOG_003578	A0A0D2U134	A0A0D2X2J3	Uncharacterized protein.	Uncharacterized protein.	0.972
CAOG_000504	CAOG_004347	A0A0D2U134	A0A0D2VRQ9	Uncharacterized protein.	Uncharacterized protein.	0.896
CAOG_000504	CAOG_004743	A0A0D2U134	A0A0D2UG25	Uncharacterized protein.	MAT1 domain-containing protein.	0.969
CAOG_000504	CAOG_004925	A0A0D2U134	A0A0D2VSW1	Uncharacterized protein.	RNA polymerase II core subunit.	0.998
CAOG_000504	CAOG_005320	A0A0D2U134	A0A0D2VTT5	Uncharacterized protein.	Uncharacterized protein.	0.849
CAOG_000504	CAOG_006159	A0A0D2U134	A0A0D2WUQ6	Uncharacterized protein.	Transcription factor IIH subunit.	0.875
CAOG_000504	CAOG_006332	A0A0D2U134	A0A0D2ULG3	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.998
CAOG_000504	CAOG_006651	A0A0D2U134	A0A0D2X4M3	Uncharacterized protein.	SHS2_Rpb7-N domain-containing protein.	0.997
CAOG_000504	CAOG_006656	A0A0D2U134	A0A0D2X4M4	Uncharacterized protein.	Tbpl2 protein.	0.972