(13 nodes) Mixed, incl. Peptide transport, and Solute-binding protein family 5 network (Variovorax paradoxus EPS)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ADU34643.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0395 binding-protein-dependent transport systems inner membrane component. (334 aa)
	ADU34644.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0396 binding-protein-dependent transport systems inner membrane component. (304 aa)
	ADU34645.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: vap:Vapar_0397 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (342 aa)
	ADU34646.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: vap:Vapar_0398 dipeptide transporter ATP-binding subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (347 aa)
	ADU34647.1	PFAM: extracellular solute-binding protein family 5; KEGG: vap:Vapar_0399 extracellular solute-binding protein family 5. (543 aa)
	ADU35511.1	PFAM: extracellular solute-binding protein family 5; KEGG: vei:Veis_3323 extracellular solute-binding protein. (527 aa)
	ADU35513.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3325 binding-protein-dependent transport systems inner membrane component. (320 aa)
	ADU35514.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3326 binding-protein-dependent transport systems inner membrane component. (277 aa)
	ADU35515.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: vap:Vapar_1217 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (348 aa)
	ADU38293.1	PFAM: extracellular solute-binding protein family 5; KEGG: vap:Vapar_2069 extracellular solute-binding protein family 5. (520 aa)
	ADU38294.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_2070 binding-protein-dependent transport systems inner membrane component. (335 aa)
	ADU38295.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_2071 binding-protein-dependent transport systems inner membrane component. (280 aa)
	ADU38296.1	KEGG: vap:Vapar_2072 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (469 aa)

Your Current Organism:

Variovorax paradoxus EPS

NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADU34643.1	ADU34644.1	Varpa_0421	Varpa_0422	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0395 binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0396 binding-protein-dependent transport systems inner membrane component.	0.992
ADU34643.1	ADU34645.1	Varpa_0421	Varpa_0423	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0395 binding-protein-dependent transport systems inner membrane component.	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: vap:Vapar_0397 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.	0.990
ADU34643.1	ADU34646.1	Varpa_0421	Varpa_0424	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0395 binding-protein-dependent transport systems inner membrane component.	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: vap:Vapar_0398 dipeptide transporter ATP-binding subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.	0.986
ADU34643.1	ADU34647.1	Varpa_0421	Varpa_0425	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0395 binding-protein-dependent transport systems inner membrane component.	PFAM: extracellular solute-binding protein family 5; KEGG: vap:Vapar_0399 extracellular solute-binding protein family 5.	0.986
ADU34643.1	ADU35511.1	Varpa_0421	Varpa_1295	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0395 binding-protein-dependent transport systems inner membrane component.	PFAM: extracellular solute-binding protein family 5; KEGG: vei:Veis_3323 extracellular solute-binding protein.	0.548
ADU34643.1	ADU35514.1	Varpa_0421	Varpa_1298	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0395 binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3326 binding-protein-dependent transport systems inner membrane component.	0.849
ADU34643.1	ADU35515.1	Varpa_0421	Varpa_1299	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0395 binding-protein-dependent transport systems inner membrane component.	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: vap:Vapar_1217 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.	0.745
ADU34643.1	ADU38293.1	Varpa_0421	Varpa_4122	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0395 binding-protein-dependent transport systems inner membrane component.	PFAM: extracellular solute-binding protein family 5; KEGG: vap:Vapar_2069 extracellular solute-binding protein family 5.	0.541
ADU34643.1	ADU38295.1	Varpa_0421	Varpa_4124	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0395 binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_2071 binding-protein-dependent transport systems inner membrane component.	0.838
ADU34643.1	ADU38296.1	Varpa_0421	Varpa_4125	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0395 binding-protein-dependent transport systems inner membrane component.	KEGG: vap:Vapar_2072 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.	0.462
ADU34644.1	ADU34643.1	Varpa_0422	Varpa_0421	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0396 binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0395 binding-protein-dependent transport systems inner membrane component.	0.992
ADU34644.1	ADU34645.1	Varpa_0422	Varpa_0423	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0396 binding-protein-dependent transport systems inner membrane component.	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: vap:Vapar_0397 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.	0.991
ADU34644.1	ADU34646.1	Varpa_0422	Varpa_0424	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0396 binding-protein-dependent transport systems inner membrane component.	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: vap:Vapar_0398 dipeptide transporter ATP-binding subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.	0.989
ADU34644.1	ADU34647.1	Varpa_0422	Varpa_0425	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0396 binding-protein-dependent transport systems inner membrane component.	PFAM: extracellular solute-binding protein family 5; KEGG: vap:Vapar_0399 extracellular solute-binding protein family 5.	0.985
ADU34644.1	ADU35511.1	Varpa_0422	Varpa_1295	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0396 binding-protein-dependent transport systems inner membrane component.	PFAM: extracellular solute-binding protein family 5; KEGG: vei:Veis_3323 extracellular solute-binding protein.	0.567
ADU34644.1	ADU35513.1	Varpa_0422	Varpa_1297	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0396 binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3325 binding-protein-dependent transport systems inner membrane component.	0.852
ADU34644.1	ADU35515.1	Varpa_0422	Varpa_1299	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0396 binding-protein-dependent transport systems inner membrane component.	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: vap:Vapar_1217 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.	0.802
ADU34644.1	ADU38293.1	Varpa_0422	Varpa_4122	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0396 binding-protein-dependent transport systems inner membrane component.	PFAM: extracellular solute-binding protein family 5; KEGG: vap:Vapar_2069 extracellular solute-binding protein family 5.	0.563
ADU34644.1	ADU38294.1	Varpa_0422	Varpa_4123	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0396 binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_2070 binding-protein-dependent transport systems inner membrane component.	0.843
ADU34644.1	ADU38296.1	Varpa_0422	Varpa_4125	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_0396 binding-protein-dependent transport systems inner membrane component.	KEGG: vap:Vapar_2072 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.	0.469