(8 nodes) Mixed, incl. glycerol-3-phosphate transmembrane transport, and Bacterial extracellular solute-binding protein network (Variovorax paradoxus EPS)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ADU35409.1	PFAM: extracellular solute-binding protein family 1; KEGG: vap:Vapar_1108 extracellular solute-binding protein family 1. (436 aa)
	ADU35410.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1109 binding-protein-dependent transport systems inner membrane component. (285 aa)
	ADU35411.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1110 binding-protein-dependent transport systems inner membrane component. (274 aa)
	ADU35412.1	KEGG: vap:Vapar_1111 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (346 aa)
	ADU38239.1	KEGG: mlo:mlr4917 sugar ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (379 aa)
	ADU38240.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr4913 sugar ABC transporter, permease protein. (278 aa)
	ADU38241.1	KEGG: mlo:mlr4912 sugar ABC transporter, permease protein. (294 aa)
	ADU38242.1	PFAM: extracellular solute-binding protein family 1; KEGG: mlo:mlr4910 hypothetical protein. (426 aa)

Your Current Organism:

Variovorax paradoxus EPS

NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADU35409.1	ADU35410.1	Varpa_1191	Varpa_1192	PFAM: extracellular solute-binding protein family 1; KEGG: vap:Vapar_1108 extracellular solute-binding protein family 1.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1109 binding-protein-dependent transport systems inner membrane component.	0.993
ADU35409.1	ADU35411.1	Varpa_1191	Varpa_1193	PFAM: extracellular solute-binding protein family 1; KEGG: vap:Vapar_1108 extracellular solute-binding protein family 1.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1110 binding-protein-dependent transport systems inner membrane component.	0.987
ADU35409.1	ADU35412.1	Varpa_1191	Varpa_1194	PFAM: extracellular solute-binding protein family 1; KEGG: vap:Vapar_1108 extracellular solute-binding protein family 1.	KEGG: vap:Vapar_1111 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.	0.950
ADU35409.1	ADU38239.1	Varpa_1191	Varpa_4067	PFAM: extracellular solute-binding protein family 1; KEGG: vap:Vapar_1108 extracellular solute-binding protein family 1.	KEGG: mlo:mlr4917 sugar ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.	0.891
ADU35409.1	ADU38240.1	Varpa_1191	Varpa_4068	PFAM: extracellular solute-binding protein family 1; KEGG: vap:Vapar_1108 extracellular solute-binding protein family 1.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr4913 sugar ABC transporter, permease protein.	0.702
ADU35409.1	ADU38241.1	Varpa_1191	Varpa_4069	PFAM: extracellular solute-binding protein family 1; KEGG: vap:Vapar_1108 extracellular solute-binding protein family 1.	KEGG: mlo:mlr4912 sugar ABC transporter, permease protein.	0.612
ADU35410.1	ADU35409.1	Varpa_1192	Varpa_1191	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1109 binding-protein-dependent transport systems inner membrane component.	PFAM: extracellular solute-binding protein family 1; KEGG: vap:Vapar_1108 extracellular solute-binding protein family 1.	0.993
ADU35410.1	ADU35411.1	Varpa_1192	Varpa_1193	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1109 binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1110 binding-protein-dependent transport systems inner membrane component.	0.994
ADU35410.1	ADU35412.1	Varpa_1192	Varpa_1194	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1109 binding-protein-dependent transport systems inner membrane component.	KEGG: vap:Vapar_1111 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.	0.992
ADU35410.1	ADU38239.1	Varpa_1192	Varpa_4067	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1109 binding-protein-dependent transport systems inner membrane component.	KEGG: mlo:mlr4917 sugar ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.	0.967
ADU35410.1	ADU38240.1	Varpa_1192	Varpa_4068	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1109 binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr4913 sugar ABC transporter, permease protein.	0.883
ADU35410.1	ADU38242.1	Varpa_1192	Varpa_4070	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1109 binding-protein-dependent transport systems inner membrane component.	PFAM: extracellular solute-binding protein family 1; KEGG: mlo:mlr4910 hypothetical protein.	0.874
ADU35411.1	ADU35409.1	Varpa_1193	Varpa_1191	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1110 binding-protein-dependent transport systems inner membrane component.	PFAM: extracellular solute-binding protein family 1; KEGG: vap:Vapar_1108 extracellular solute-binding protein family 1.	0.987
ADU35411.1	ADU35410.1	Varpa_1193	Varpa_1192	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1110 binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1109 binding-protein-dependent transport systems inner membrane component.	0.994
ADU35411.1	ADU35412.1	Varpa_1193	Varpa_1194	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1110 binding-protein-dependent transport systems inner membrane component.	KEGG: vap:Vapar_1111 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.	0.992
ADU35411.1	ADU38239.1	Varpa_1193	Varpa_4067	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1110 binding-protein-dependent transport systems inner membrane component.	KEGG: mlo:mlr4917 sugar ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.	0.965
ADU35411.1	ADU38241.1	Varpa_1193	Varpa_4069	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1110 binding-protein-dependent transport systems inner membrane component.	KEGG: mlo:mlr4912 sugar ABC transporter, permease protein.	0.882
ADU35411.1	ADU38242.1	Varpa_1193	Varpa_4070	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1110 binding-protein-dependent transport systems inner membrane component.	PFAM: extracellular solute-binding protein family 1; KEGG: mlo:mlr4910 hypothetical protein.	0.881
ADU35412.1	ADU35409.1	Varpa_1194	Varpa_1191	KEGG: vap:Vapar_1111 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.	PFAM: extracellular solute-binding protein family 1; KEGG: vap:Vapar_1108 extracellular solute-binding protein family 1.	0.950
ADU35412.1	ADU35410.1	Varpa_1194	Varpa_1192	KEGG: vap:Vapar_1111 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1109 binding-protein-dependent transport systems inner membrane component.	0.992