Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EIG54442.1 | EIG55372.1 | DesU5LDRAFT_2797 | DesU5LDRAFT_3755 | Hypothetical protein; PFAM: SEC-C motif; Belongs to the UPF0225 family. | PFAM: Plasmid pRiA4b ORF-3-like protein; manually curated. | 0.433 |
| EIG54442.1 | secA | DesU5LDRAFT_2797 | DesU5LDRAFT_2923 | Hypothetical protein; PFAM: SEC-C motif; Belongs to the UPF0225 family. | Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | 0.460 |
| EIG54442.1 | secD | DesU5LDRAFT_2797 | DesU5LDRAFT_1649 | Hypothetical protein; PFAM: SEC-C motif; Belongs to the UPF0225 family. | Protein-export membrane protein, SecD/SecF family; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.638 |
| EIG54442.1 | secF | DesU5LDRAFT_2797 | DesU5LDRAFT_1067 | Hypothetical protein; PFAM: SEC-C motif; Belongs to the UPF0225 family. | Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.563 |
| EIG54442.1 | secY | DesU5LDRAFT_2797 | DesU5LDRAFT_3599 | Hypothetical protein; PFAM: SEC-C motif; Belongs to the UPF0225 family. | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.694 |
| EIG54993.1 | EIG55372.1 | DesU5LDRAFT_3363 | DesU5LDRAFT_3755 | Hypothetical protein. | PFAM: Plasmid pRiA4b ORF-3-like protein; manually curated. | 0.665 |
| EIG54993.1 | secA | DesU5LDRAFT_3363 | DesU5LDRAFT_2923 | Hypothetical protein. | Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | 0.665 |
| EIG54993.1 | secD | DesU5LDRAFT_3363 | DesU5LDRAFT_1649 | Hypothetical protein. | Protein-export membrane protein, SecD/SecF family; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.707 |
| EIG54993.1 | secE | DesU5LDRAFT_3363 | DesU5LDRAFT_2427 | Hypothetical protein. | Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.711 |
| EIG54993.1 | secF | DesU5LDRAFT_3363 | DesU5LDRAFT_1067 | Hypothetical protein. | Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.702 |
| EIG54993.1 | secY | DesU5LDRAFT_3363 | DesU5LDRAFT_3599 | Hypothetical protein. | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.702 |
| EIG55372.1 | EIG54442.1 | DesU5LDRAFT_3755 | DesU5LDRAFT_2797 | PFAM: Plasmid pRiA4b ORF-3-like protein; manually curated. | Hypothetical protein; PFAM: SEC-C motif; Belongs to the UPF0225 family. | 0.433 |
| EIG55372.1 | EIG54993.1 | DesU5LDRAFT_3755 | DesU5LDRAFT_3363 | PFAM: Plasmid pRiA4b ORF-3-like protein; manually curated. | Hypothetical protein. | 0.665 |
| EIG55372.1 | secD | DesU5LDRAFT_3755 | DesU5LDRAFT_1649 | PFAM: Plasmid pRiA4b ORF-3-like protein; manually curated. | Protein-export membrane protein, SecD/SecF family; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.800 |
| EIG55372.1 | secE | DesU5LDRAFT_3755 | DesU5LDRAFT_2427 | PFAM: Plasmid pRiA4b ORF-3-like protein; manually curated. | Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.970 |
| EIG55372.1 | secF | DesU5LDRAFT_3755 | DesU5LDRAFT_1067 | PFAM: Plasmid pRiA4b ORF-3-like protein; manually curated. | Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.710 |
| EIG55372.1 | secY | DesU5LDRAFT_3755 | DesU5LDRAFT_3599 | PFAM: Plasmid pRiA4b ORF-3-like protein; manually curated. | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.973 |
| secA | EIG54442.1 | DesU5LDRAFT_2923 | DesU5LDRAFT_2797 | Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | Hypothetical protein; PFAM: SEC-C motif; Belongs to the UPF0225 family. | 0.460 |
| secA | EIG54993.1 | DesU5LDRAFT_2923 | DesU5LDRAFT_3363 | Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | Hypothetical protein. | 0.665 |
| secA | secD | DesU5LDRAFT_2923 | DesU5LDRAFT_1649 | Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | Protein-export membrane protein, SecD/SecF family; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.885 |
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