STRINGSTRING
rpoA rpoA EIG51885.1 EIG51885.1 EIG51886.1 EIG51886.1 EIG51913.1 EIG51913.1 EIG51941.1 EIG51941.1 EIG51970.1 EIG51970.1 EIG51978.1 EIG51978.1 EIG52018.1 EIG52018.1 EIG52019.1 EIG52019.1 EIG52051.1 EIG52051.1 EIG52137.1 EIG52137.1 EIG52260.1 EIG52260.1 EIG52261.1 EIG52261.1 EIG52283.1 EIG52283.1 EIG52305.1 EIG52305.1 EIG52353.1 EIG52353.1 EIG52354.1 EIG52354.1 EIG52436.1 EIG52436.1 EIG52476.1 EIG52476.1 EIG52657.1 EIG52657.1 EIG52672.1 EIG52672.1 EIG52713.1 EIG52713.1 EIG52730.1 EIG52730.1 EIG52748.1 EIG52748.1 secF secF EIG52824.1 EIG52824.1 EIG52962.1 EIG52962.1 EIG53026.1 EIG53026.1 ndk ndk EIG53081.1 EIG53081.1 EIG53140.1 EIG53140.1 EIG53204.1 EIG53204.1 EIG53224.1 EIG53224.1 EIG53241.1 EIG53241.1 EIG53269.1 EIG53269.1 secD secD EIG53335.1 EIG53335.1 EIG53399.1 EIG53399.1 EIG53457.1 EIG53457.1 EIG53466.1 EIG53466.1 EIG53486.1 EIG53486.1 EIG53528.1 EIG53528.1 EIG53529.1 EIG53529.1 EIG53576.1 EIG53576.1 EIG53670.1 EIG53670.1 rpoC rpoC EIG55654.1 EIG55654.1 EIG55524.1 EIG55524.1 EIG55422.1 EIG55422.1 EIG55372.1 EIG55372.1 EIG55337.1 EIG55337.1 EIG55242.1 EIG55242.1 secY secY rpoB rpoB secE secE tuf tuf rpoZ rpoZ EIG54359.1 EIG54359.1 EIG54481.1 EIG54481.1 EIG54495.1 EIG54495.1 EIG54502.1 EIG54502.1 EIG54504.1 EIG54504.1 secA secA EIG54573.1 EIG54573.1 EIG54655.1 EIG54655.1 EIG54698.1 EIG54698.1 EIG54759.1 EIG54759.1 EIG54947.1 EIG54947.1 EIG55093.1 EIG55093.1 EIG55131.1 EIG55131.1 EIG55170.1 EIG55170.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpoADNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (347 aa)
EIG51885.1Peroxiredoxin; PFAM: AhpC/TSA family. (195 aa)
EIG51886.1Peroxiredoxin; PFAM: AhpC/TSA family. (205 aa)
EIG51913.1Drug resistance transporter, EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily. (527 aa)
EIG51941.1Zn-dependent alcohol dehydrogenase, class III; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase. (364 aa)
EIG51970.1Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (235 aa)
EIG51978.1Putative Zn-dependent hydrolase of beta-lactamase fold. (244 aa)
EIG52018.1ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component. (281 aa)
EIG52019.1ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component. (332 aa)
EIG52051.1Drug resistance transporter, EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily; manually curated. (523 aa)
EIG52137.1ABC-type transport system involved in resistance to organic solvents, periplasmic component; PFAM: mce related protein. (304 aa)
EIG52260.1PFAM: Thioredoxin. (144 aa)
EIG52261.1Transcriptional regulator. (157 aa)
EIG52283.1Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily. (393 aa)
EIG52305.1Translation elongation factor-like GTPase; PFAM: Elongation factor Tu GTP binding domain; partial gene. (87 aa)
EIG52353.1Protein-tyrosine-phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase. (146 aa)
EIG52354.1Protein-tyrosine-phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase. (149 aa)
EIG52436.1Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. (171 aa)
EIG52476.1ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter transmembrane region; ABC transporter. (846 aa)
EIG52657.1Cell division protein; PFAM: Sporulation related domain. (423 aa)
EIG52672.1Phosphate binding protein. (267 aa)
EIG52713.1Drug resistance transporter, EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily. (518 aa)
EIG52730.1PFAM: Bacterial protein of unknown function (DUF894). (411 aa)
EIG52748.1Peroxiredoxin; PFAM: AhpC/TSA family. (221 aa)
secFProtein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (363 aa)
EIG52824.1Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (383 aa)
EIG52962.1Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily. (398 aa)
EIG53026.1Hypothetical protein. (137 aa)
ndkNucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. (138 aa)
EIG53081.1Protein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. (133 aa)
EIG53140.1Integral membrane protein CcmA involved in cell shape determination; PFAM: Protein of unknown function, DUF583. (576 aa)
EIG53204.1Ferritin-like protein; Iron-storage protein. (170 aa)
EIG53224.1Putative Zn-dependent hydrolase of beta-lactamase fold. (239 aa)
EIG53241.1ABC-type transport system involved in resistance to organic solvents, periplasmic component; PFAM: mce related protein. (149 aa)
EIG53269.1Hypothetical protein. (55 aa)
secDProtein-export membrane protein, SecD/SecF family; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (534 aa)
EIG53335.1Thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase. (301 aa)
EIG53399.1Hypothetical protein. (328 aa)
EIG53457.1PFAM: Bacterial mobilisation protein (MobC); Protein of unknown function (DUF1778). (127 aa)
EIG53466.1Arabinose efflux permease family protein; PFAM: Bacterial protein of unknown function (DUF894). (428 aa)
EIG53486.1ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter transmembrane region; ABC transporter. (589 aa)
EIG53528.1PFAM: Pyridine nucleotide-disulphide oxidoreductase. (309 aa)
EIG53529.1PFAM: Thioredoxin; Belongs to the thioredoxin family. (106 aa)
EIG53576.1PFAM: Miro-like protein; TIGRFAM: small GTP-binding protein domain. (1279 aa)
EIG53670.1Hypothetical protein. (94 aa)
rpoCDNA-directed RNA polymerase, beta'' subunit, predominant form; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1386 aa)
EIG55654.1Transcriptional regulator; PFAM: AsnC family. (158 aa)
EIG55524.1Arabinose efflux permease family protein. (403 aa)
EIG55422.1Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (198 aa)
EIG55372.1PFAM: Plasmid pRiA4b ORF-3-like protein; manually curated. (190 aa)
EIG55337.1ABC-type dipeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle. (557 aa)
EIG55242.1PFAM: Elongation factor Tu C-terminal domain; Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU. (397 aa)
secYPreprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (437 aa)
rpoBDNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1368 aa)
secEPreprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. (103 aa)
tufTranslation elongation factor TU; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (397 aa)
rpoZDNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (74 aa)
EIG54359.1Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily. (470 aa)
EIG54481.1Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. (217 aa)
EIG54495.1Thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: Glutaredoxin-like domain protein; thioredoxin-disulfide reductase. (566 aa)
EIG54502.1Flp pilus assembly protein TadG; PFAM: TadE-like protein. (146 aa)
EIG54504.1PFAM: TadE-like protein. (150 aa)
secAPreprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. (837 aa)
EIG54573.1Hypothetical protein; PFAM: Carboxymuconolactone decarboxylase family. (181 aa)
EIG54655.1Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein; PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; Major Facilitator Superfamily. (395 aa)
EIG54698.1ABC-type phosphate transport system, periplasmic component. (287 aa)
EIG54759.1Hypothetical protein. (553 aa)
EIG54947.1Nitrate/nitrite transporter; PFAM: Major Facilitator Superfamily. (524 aa)
EIG55093.1Hypothetical protein. (169 aa)
EIG55131.1Transcriptional regulator. (162 aa)
EIG55170.1ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter; ABC transporter transmembrane region. (601 aa)
Your Current Organism:
Desulfovibrio sp. U5L
NCBI taxonomy Id: 596152
Other names: D. sp. U5L
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