(12 nodes) Benzoate degradation network (Desulfovibrio sp. U5L)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EIG52761.1	CoA-substrate-specific enzyme activase, putative; PFAM: BadF/BadG/BcrA/BcrD ATPase family. (250 aa)
	EIG55542.1	Uncharacterized protein, 4-oxalocrotonate tautomerase; PFAM: Tautomerase enzyme; Belongs to the 4-oxalocrotonate tautomerase family. (185 aa)
	EIG55065.1	PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (232 aa)
	EIG54756.1	Alkylhydroperoxidase AhpD family core domain; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (113 aa)
	EIG54654.1	Uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein; PFAM: Carboxymuconolactone decarboxylase family. (241 aa)
	EIG54650.1	Uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein; PFAM: Carboxymuconolactone decarboxylase family. (256 aa)
	EIG54573.1	Hypothetical protein; PFAM: Carboxymuconolactone decarboxylase family. (181 aa)
	EIG54383.1	Alkylhydroperoxidase AhpD family core domain; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (130 aa)
	EIG53792.1	PFAM: Tautomerase enzyme; TIGRFAM: 4-oxalocrotonate tautomerase family enzyme. (70 aa)
	EIG53391.1	Uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein; PFAM: Carboxymuconolactone decarboxylase family. (107 aa)
	EIG53190.1	PFAM: Thioesterase superfamily. (144 aa)
	EIG52762.1	Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component. (426 aa)

Your Current Organism:

Desulfovibrio sp. U5L

NCBI taxonomy Id: 596152
Other names: D. sp. U5L

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIG52761.1	EIG52762.1	DesU5LDRAFT_1060	DesU5LDRAFT_1061	CoA-substrate-specific enzyme activase, putative; PFAM: BadF/BadG/BcrA/BcrD ATPase family.	Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component.	0.999
EIG52762.1	EIG52761.1	DesU5LDRAFT_1061	DesU5LDRAFT_1060	Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component.	CoA-substrate-specific enzyme activase, putative; PFAM: BadF/BadG/BcrA/BcrD ATPase family.	0.999
EIG53391.1	EIG54573.1	DesU5LDRAFT_1711	DesU5LDRAFT_2930	Uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein; PFAM: Carboxymuconolactone decarboxylase family.	Hypothetical protein; PFAM: Carboxymuconolactone decarboxylase family.	0.498
EIG54383.1	EIG54573.1	DesU5LDRAFT_2738	DesU5LDRAFT_2930	Alkylhydroperoxidase AhpD family core domain; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	Hypothetical protein; PFAM: Carboxymuconolactone decarboxylase family.	0.498
EIG54383.1	EIG54756.1	DesU5LDRAFT_2738	DesU5LDRAFT_3122	Alkylhydroperoxidase AhpD family core domain; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	Alkylhydroperoxidase AhpD family core domain; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	0.774
EIG54573.1	EIG53391.1	DesU5LDRAFT_2930	DesU5LDRAFT_1711	Hypothetical protein; PFAM: Carboxymuconolactone decarboxylase family.	Uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein; PFAM: Carboxymuconolactone decarboxylase family.	0.498
EIG54573.1	EIG54383.1	DesU5LDRAFT_2930	DesU5LDRAFT_2738	Hypothetical protein; PFAM: Carboxymuconolactone decarboxylase family.	Alkylhydroperoxidase AhpD family core domain; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	0.498
EIG54573.1	EIG54650.1	DesU5LDRAFT_2930	DesU5LDRAFT_3010	Hypothetical protein; PFAM: Carboxymuconolactone decarboxylase family.	Uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein; PFAM: Carboxymuconolactone decarboxylase family.	0.642
EIG54573.1	EIG54654.1	DesU5LDRAFT_2930	DesU5LDRAFT_3014	Hypothetical protein; PFAM: Carboxymuconolactone decarboxylase family.	Uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein; PFAM: Carboxymuconolactone decarboxylase family.	0.678
EIG54573.1	EIG54756.1	DesU5LDRAFT_2930	DesU5LDRAFT_3122	Hypothetical protein; PFAM: Carboxymuconolactone decarboxylase family.	Alkylhydroperoxidase AhpD family core domain; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	0.498
EIG54650.1	EIG54573.1	DesU5LDRAFT_3010	DesU5LDRAFT_2930	Uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein; PFAM: Carboxymuconolactone decarboxylase family.	Hypothetical protein; PFAM: Carboxymuconolactone decarboxylase family.	0.642
EIG54650.1	EIG54654.1	DesU5LDRAFT_3010	DesU5LDRAFT_3014	Uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein; PFAM: Carboxymuconolactone decarboxylase family.	Uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein; PFAM: Carboxymuconolactone decarboxylase family.	0.715
EIG54654.1	EIG54573.1	DesU5LDRAFT_3014	DesU5LDRAFT_2930	Uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein; PFAM: Carboxymuconolactone decarboxylase family.	Hypothetical protein; PFAM: Carboxymuconolactone decarboxylase family.	0.678
EIG54654.1	EIG54650.1	DesU5LDRAFT_3014	DesU5LDRAFT_3010	Uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein; PFAM: Carboxymuconolactone decarboxylase family.	Uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein; PFAM: Carboxymuconolactone decarboxylase family.	0.715
EIG54756.1	EIG54383.1	DesU5LDRAFT_3122	DesU5LDRAFT_2738	Alkylhydroperoxidase AhpD family core domain; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	Alkylhydroperoxidase AhpD family core domain; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	0.774
EIG54756.1	EIG54573.1	DesU5LDRAFT_3122	DesU5LDRAFT_2930	Alkylhydroperoxidase AhpD family core domain; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	Hypothetical protein; PFAM: Carboxymuconolactone decarboxylase family.	0.498