STRINGSTRING
EEK17596.1 EEK17596.1 EEK16294.1 EEK16294.1 EEK17649.1 EEK17649.1 EEK16915.1 EEK16915.1 ppdK ppdK maeB maeB vorB vorB EEK16693.1 EEK16693.1 porG porG nifJ nifJ EEK17145.1 EEK17145.1 pckA pckA mutA mutA EEK17287.1 EEK17287.1 EEK17304.1 EEK17304.1 EEK17274.1 EEK17274.1 cat-2 cat-2 EEK17315.1 EEK17315.1 abfD abfD EEK17294.1 EEK17294.1 fumB fumB EEK16734.1 EEK16734.1 EEK16727.1 EEK16727.1 orB orB ackA ackA pta pta mce mce EEK16127.1 EEK16127.1 mmdC mmdC sdhC sdhC sdhA sdhA frdB frdB EEK17479.1 EEK17479.1 aspA aspA EEK16464.1 EEK16464.1 EEK16504.1 EEK16504.1 EEK16474.1 EEK16474.1 EEK16483.1 EEK16483.1 mdh mdh EEK16791.1 EEK16791.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
EEK17596.1Succinate CoA transferase; Identified by match to protein family HMM PF02550; match to protein family HMM TIGR03458. (493 aa)
EEK16294.1LAO/AO transport system ATPase; Identified by match to protein family HMM PF03308; match to protein family HMM TIGR00750. (367 aa)
EEK17649.1Sodium ion-translocating decarboxylase, beta subunit; Identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109. (384 aa)
EEK16915.1Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (547 aa)
ppdKPyruvate, phosphate dikinase; Identified by match to protein family HMM PF00391; match to protein family HMM PF01326; match to protein family HMM PF02896; match to protein family HMM TIGR01828; Belongs to the PEP-utilizing enzyme family. (909 aa)
maeBMalate dehydrogenase (oxaloacetate-decarboxylating); Identified by match to protein family HMM PF00390; match to protein family HMM PF01515; match to protein family HMM PF03949. (758 aa)
vorB3-methyl-2-oxobutanoate dehydrogenase (ferredoxin); Identified by match to protein family HMM PF01855. (359 aa)
EEK16693.1Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; Identified by match to protein family HMM PF02775. (267 aa)
porG2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit; Identified by match to protein family HMM PF01558. (181 aa)
nifJPyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176. (1209 aa)
EEK17145.1biotin--[acetyl-CoA-carboxylase] ligase; Identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121. (249 aa)
pckAPhosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (537 aa)
mutAmethylmalonyl-CoA mutase, small subunit; Identified by match to protein family HMM PF01642; match to protein family HMM TIGR00642. (623 aa)
EEK17287.1methylmalonyl-CoA mutase; Identified by match to protein family HMM PF01642; match to protein family HMM PF02310; match to protein family HMM TIGR00640; match to protein family HMM TIGR00641. (718 aa)
EEK17304.1Aldehyde dehydrogenase (NAD) family protein; Identified by match to protein family HMM PF00171. (452 aa)
EEK17274.1Alcohol dehydrogenase, iron-dependent; Identified by match to protein family HMM PF00465. (371 aa)
cat-24-hydroxybutyrate coenzyme A transferase; Identified by match to protein family HMM PF02550. (428 aa)
EEK17315.1Identified by match to protein family HMM PF01106. (97 aa)
abfDGamma-aminobutyrate metabolism dehydratase/isomerase; Identified by match to protein family HMM PF03241. (491 aa)
EEK17294.1Hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type; Identified by match to protein family HMM PF05681; match to protein family HMM TIGR00722. (280 aa)
fumBHydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; Identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723. (185 aa)
EEK16734.1Pyruvate synthase; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (87 aa)
EEK16727.12-oxoacid:acceptor oxidoreductase, alpha subunit; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01855; match to protein family HMM TIGR03710. (536 aa)
orB2-oxoglutarate ferredoxin oxidoreductase subunit beta; Identified by match to protein family HMM PF02775. (347 aa)
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (398 aa)
ptaPhosphate acetyltransferase; Identified by match to protein family HMM PF01515; match to protein family HMM TIGR00651. (335 aa)
mcemethylmalonyl-CoA epimerase; Identified by match to protein family HMM PF00903; match to protein family HMM TIGR03081. (138 aa)
EEK16127.1Carboxyl transferase domain protein; Identified by match to protein family HMM PF01039. (517 aa)
mmdCBiotin-requiring enzyme; Identified by match to protein family HMM PF00364. (145 aa)
sdhCSuccinate dehydrogenase cytochrome B subunit, b558 family; Identified by match to protein family HMM TIGR02046. (268 aa)
sdhASuccinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM TIGR01811. (647 aa)
frdBSuccinate dehydrogenase/fumarate reductase iron-sulfur subunit; Identified by match to protein family HMM PF00037. (251 aa)
EEK17479.1Hypothetical protein. (185 aa)
aspAPutative aspartate ammonia-lyase; Identified by match to protein family HMM PF00206. (477 aa)
EEK16464.1Hypothetical protein. (391 aa)
EEK16504.1Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (64 aa)
EEK16474.1Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (115 aa)
EEK16483.1Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (402 aa)
mdhLactate/malate dehydrogenase, NAD binding domain protein; Identified by match to protein family HMM PF00056; match to protein family HMM PF02866; Belongs to the LDH/MDH superfamily. (332 aa)
EEK16791.1Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (74 aa)
Your Current Organism:
Porphyromonas uenonis 603
NCBI taxonomy Id: 596327
Other names: P. uenonis 60-3, Porphyromonas uenonis 60-3, Porphyromonas uenonis str. 60-3, Porphyromonas uenonis strain 60-3
Server load: low (20%) [HD]