Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EEK16693.1 | EEK16727.1 | PORUE0001_0836 | PORUE0001_1259 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; Identified by match to protein family HMM PF02775. | 2-oxoacid:acceptor oxidoreductase, alpha subunit; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01855; match to protein family HMM TIGR03710. | 0.999 |
| EEK16693.1 | EEK16734.1 | PORUE0001_0836 | PORUE0001_1258 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; Identified by match to protein family HMM PF02775. | Pyruvate synthase; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.999 |
| EEK16693.1 | nifJ | PORUE0001_0836 | PORUE0001_0886 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; Identified by match to protein family HMM PF02775. | Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176. | 0.999 |
| EEK16693.1 | orB | PORUE0001_0836 | PORUE0001_1260 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; Identified by match to protein family HMM PF02775. | 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Identified by match to protein family HMM PF02775. | 0.899 |
| EEK16693.1 | porG | PORUE0001_0836 | PORUE0001_0837 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; Identified by match to protein family HMM PF02775. | 2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit; Identified by match to protein family HMM PF01558. | 0.999 |
| EEK16693.1 | vorB | PORUE0001_0836 | PORUE0001_0835 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; Identified by match to protein family HMM PF02775. | 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin); Identified by match to protein family HMM PF01855. | 0.999 |
| EEK16727.1 | EEK16693.1 | PORUE0001_1259 | PORUE0001_0836 | 2-oxoacid:acceptor oxidoreductase, alpha subunit; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01855; match to protein family HMM TIGR03710. | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; Identified by match to protein family HMM PF02775. | 0.999 |
| EEK16727.1 | EEK16734.1 | PORUE0001_1259 | PORUE0001_1258 | 2-oxoacid:acceptor oxidoreductase, alpha subunit; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01855; match to protein family HMM TIGR03710. | Pyruvate synthase; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.999 |
| EEK16727.1 | nifJ | PORUE0001_1259 | PORUE0001_0886 | 2-oxoacid:acceptor oxidoreductase, alpha subunit; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01855; match to protein family HMM TIGR03710. | Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176. | 0.999 |
| EEK16727.1 | orB | PORUE0001_1259 | PORUE0001_1260 | 2-oxoacid:acceptor oxidoreductase, alpha subunit; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01855; match to protein family HMM TIGR03710. | 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Identified by match to protein family HMM PF02775. | 0.999 |
| EEK16727.1 | porG | PORUE0001_1259 | PORUE0001_0837 | 2-oxoacid:acceptor oxidoreductase, alpha subunit; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01855; match to protein family HMM TIGR03710. | 2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit; Identified by match to protein family HMM PF01558. | 0.884 |
| EEK16727.1 | vorB | PORUE0001_1259 | PORUE0001_0835 | 2-oxoacid:acceptor oxidoreductase, alpha subunit; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01855; match to protein family HMM TIGR03710. | 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin); Identified by match to protein family HMM PF01855. | 0.889 |
| EEK16734.1 | EEK16693.1 | PORUE0001_1258 | PORUE0001_0836 | Pyruvate synthase; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; Identified by match to protein family HMM PF02775. | 0.999 |
| EEK16734.1 | EEK16727.1 | PORUE0001_1258 | PORUE0001_1259 | Pyruvate synthase; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 2-oxoacid:acceptor oxidoreductase, alpha subunit; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01855; match to protein family HMM TIGR03710. | 0.999 |
| EEK16734.1 | nifJ | PORUE0001_1258 | PORUE0001_0886 | Pyruvate synthase; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176. | 0.999 |
| EEK16734.1 | orB | PORUE0001_1258 | PORUE0001_1260 | Pyruvate synthase; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Identified by match to protein family HMM PF02775. | 0.999 |
| EEK16734.1 | porG | PORUE0001_1258 | PORUE0001_0837 | Pyruvate synthase; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit; Identified by match to protein family HMM PF01558. | 0.884 |
| EEK16734.1 | vorB | PORUE0001_1258 | PORUE0001_0835 | Pyruvate synthase; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin); Identified by match to protein family HMM PF01855. | 0.940 |
| nifJ | EEK16693.1 | PORUE0001_0886 | PORUE0001_0836 | Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176. | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; Identified by match to protein family HMM PF02775. | 0.999 |
| nifJ | EEK16727.1 | PORUE0001_0886 | PORUE0001_1259 | Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176. | 2-oxoacid:acceptor oxidoreductase, alpha subunit; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01855; match to protein family HMM TIGR03710. | 0.999 |
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