(21 nodes) Oxidative phosphorylation network (Porphyromonas uenonis 603)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cydB	Putative cytochrome d ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF02322. (390 aa)
	cydA	Bacterial cytochrome ubiquinol oxidase; Identified by match to protein family HMM PF01654; Belongs to the cytochrome ubiquinol oxidase subunit 1 family. (543 aa)
	EEK17007.1	Peptidase M16 inactive domain protein; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193. (414 aa)
	ppk1	Polyphosphate kinase 1; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. (699 aa)
	EEK17813.1	Identified by match to protein family HMM PF08889. (217 aa)
	EEK16925.1	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02906. (492 aa)
	EEK16652.1	Peptidase M16 inactive domain protein; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; Belongs to the peptidase M16 family. (945 aa)
	EEK16184.1	ATP synthase subunit C; Identified by match to protein family HMM PF00137. (159 aa)
	EEK16198.1	V-type ATPase 116kDa subunit family protein; Identified by match to protein family HMM PF01496; Belongs to the V-ATPase 116 kDa subunit family. (609 aa)
	EEK16195.1	V-type ATPase, D subunit; Identified by match to protein family HMM TIGR00309. (206 aa)
	EEK16194.1	ATP synthase alpha/beta family, nucleotide-binding domain protein; Identified by match to protein family HMM PF00006. (446 aa)
	atpA	ATP synthase alpha/beta family, nucleotide-binding domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family. (589 aa)
	EEK16177.1	Hypothetical protein. (328 aa)
	EEK16190.1	Hypothetical protein. (197 aa)
	rbfA	Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. (111 aa)
	EEK16257.1	Calcium-translocating P-type ATPase, PMCA-type; Identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01517. (894 aa)
	EEK16263.1	Calcium-translocating P-type ATPase, PMCA-type; Identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01517. (896 aa)
	sdhC	Succinate dehydrogenase cytochrome B subunit, b558 family; Identified by match to protein family HMM TIGR02046. (268 aa)
	sdhA	Succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM TIGR01811. (647 aa)
	frdB	Succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Identified by match to protein family HMM PF00037. (251 aa)
	EEK16791.1	Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (74 aa)

Your Current Organism:

Porphyromonas uenonis 603

NCBI taxonomy Id: 596327
Other names: P. uenonis 60-3, Porphyromonas uenonis 60-3, Porphyromonas uenonis str. 60-3, Porphyromonas uenonis strain 60-3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEK16177.1	EEK16184.1	PORUE0001_0907	PORUE0001_0902	Hypothetical protein.	ATP synthase subunit C; Identified by match to protein family HMM PF00137.	0.999
EEK16177.1	EEK16190.1	PORUE0001_0907	PORUE0001_0908	Hypothetical protein.	Hypothetical protein.	0.999
EEK16177.1	EEK16194.1	PORUE0001_0907	PORUE0001_0905	Hypothetical protein.	ATP synthase alpha/beta family, nucleotide-binding domain protein; Identified by match to protein family HMM PF00006.	0.999
EEK16177.1	EEK16195.1	PORUE0001_0907	PORUE0001_0904	Hypothetical protein.	V-type ATPase, D subunit; Identified by match to protein family HMM TIGR00309.	0.999
EEK16177.1	EEK16198.1	PORUE0001_0907	PORUE0001_0903	Hypothetical protein.	V-type ATPase 116kDa subunit family protein; Identified by match to protein family HMM PF01496; Belongs to the V-ATPase 116 kDa subunit family.	0.999
EEK16177.1	EEK16257.1	PORUE0001_0907	PORUE0001_1420	Hypothetical protein.	Calcium-translocating P-type ATPase, PMCA-type; Identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01517.	0.443
EEK16177.1	EEK16263.1	PORUE0001_0907	PORUE0001_1448	Hypothetical protein.	Calcium-translocating P-type ATPase, PMCA-type; Identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01517.	0.443
EEK16177.1	atpA	PORUE0001_0907	PORUE0001_0906	Hypothetical protein.	ATP synthase alpha/beta family, nucleotide-binding domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	0.999
EEK16184.1	EEK16177.1	PORUE0001_0902	PORUE0001_0907	ATP synthase subunit C; Identified by match to protein family HMM PF00137.	Hypothetical protein.	0.999
EEK16184.1	EEK16190.1	PORUE0001_0902	PORUE0001_0908	ATP synthase subunit C; Identified by match to protein family HMM PF00137.	Hypothetical protein.	0.999
EEK16184.1	EEK16194.1	PORUE0001_0902	PORUE0001_0905	ATP synthase subunit C; Identified by match to protein family HMM PF00137.	ATP synthase alpha/beta family, nucleotide-binding domain protein; Identified by match to protein family HMM PF00006.	0.999
EEK16184.1	EEK16195.1	PORUE0001_0902	PORUE0001_0904	ATP synthase subunit C; Identified by match to protein family HMM PF00137.	V-type ATPase, D subunit; Identified by match to protein family HMM TIGR00309.	0.999
EEK16184.1	EEK16198.1	PORUE0001_0902	PORUE0001_0903	ATP synthase subunit C; Identified by match to protein family HMM PF00137.	V-type ATPase 116kDa subunit family protein; Identified by match to protein family HMM PF01496; Belongs to the V-ATPase 116 kDa subunit family.	0.999
EEK16184.1	EEK16257.1	PORUE0001_0902	PORUE0001_1420	ATP synthase subunit C; Identified by match to protein family HMM PF00137.	Calcium-translocating P-type ATPase, PMCA-type; Identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01517.	0.522
EEK16184.1	EEK16263.1	PORUE0001_0902	PORUE0001_1448	ATP synthase subunit C; Identified by match to protein family HMM PF00137.	Calcium-translocating P-type ATPase, PMCA-type; Identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01517.	0.522
EEK16184.1	EEK17813.1	PORUE0001_0902	PORUE0001_0584	ATP synthase subunit C; Identified by match to protein family HMM PF00137.	Identified by match to protein family HMM PF08889.	0.999
EEK16184.1	atpA	PORUE0001_0902	PORUE0001_0906	ATP synthase subunit C; Identified by match to protein family HMM PF00137.	ATP synthase alpha/beta family, nucleotide-binding domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	0.999
EEK16190.1	EEK16177.1	PORUE0001_0908	PORUE0001_0907	Hypothetical protein.	Hypothetical protein.	0.999
EEK16190.1	EEK16184.1	PORUE0001_0908	PORUE0001_0902	Hypothetical protein.	ATP synthase subunit C; Identified by match to protein family HMM PF00137.	0.999
EEK16190.1	EEK16194.1	PORUE0001_0908	PORUE0001_0905	Hypothetical protein.	ATP synthase alpha/beta family, nucleotide-binding domain protein; Identified by match to protein family HMM PF00006.	0.999